RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 HEG1Q9ULI3 1381 aa10.14□□□□□ -0.79
HMGB3P1-201ENST00000393368 HTATSF1O43719 755 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 RPS6KA4O75676 772 aa10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 POLD1P28340 1107 aa10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 TMPOP42166 694 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 TRAPPC3LQ5T215 181 aa10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 RC3H1Q5TC82 1133 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 FLAD1Q8NFF5 587 aa10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 ARHGEF1Q92888 912 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 PNNQ9H307 717 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 CCDC87Q9NVE4 849 aa10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 SRP68Q9UHB9 627 aaKnown RBP10.13□□□□□ -0.79
HMGB3P1-201ENST00000393368 DLG5Q8TDM6 1919 aa10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 CANXP27824 592 aaKnown RBP10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 PIP4K2AP48426 406 aaPredicted RBP10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 RUNDC1Q96C34 613 aa10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 FMNL2Q96PY5 1086 aa10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 MYH14Q7Z406 1995 aaKnown RBP10.12□□□□□ -0.79
HMGB3P1-201ENST00000393368 SOS1Q07889 1333 aaPredicted RBP10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 C4AP0C0L4 1744 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 COL24A1Q17RW2 1714 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 HMGB2P26583 209 aaKnown RBP10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 RFC4P35249 363 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 TAF7Q15545 349 aaPredicted RBP10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 VSIG10Q8N0Z9 540 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 NLGN2Q8NFZ4 835 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 SYT17Q9BSW7 474 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 MRS2Q9HD23 443 aa10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 ZNF330Q9Y3S2 320 aaPredicted RBP10.11□□□□□ -0.79
HMGB3P1-201ENST00000393368 APAF1O14727 1248 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 A1BGP04217 495 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 GYS1P13807 737 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 TRIM35Q9UPQ4 493 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 USP16Q9Y5T5 823 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 COL15A1P39059 1388 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 UTRNP46939 3433 aa10.1□□□□□ -0.79
HMGB3P1-201ENST00000393368 USP42Q9H9J4 1324 aaKnown RBP10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 STARD3NLO95772 234 aa10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 MMP10P09238 476 aa10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 FKBP8Q14318 412 aa10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 USPL1Q5W0Q7 1092 aa10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 GOLGB1Q14789 3259 aaKnown RBP10.09□□□□□ -0.79
HMGB3P1-201ENST00000393368 CAPN15O75808 1086 aa10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 MYCNP04198 464 aaPredicted RBP10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 PNISRQ8TF01 805 aaKnown RBP10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 FOXD4L1Q9NU39 408 aa10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 TSPYL4Q9UJ04 414 aa10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 WWC3Q9ULE0 1092 aa10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 LAS1LQ9Y4W2 734 aaKnown RBP10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 KDM3BQ7LBC6 1761 aa10.08□□□□□ -0.8
HMGB3P1-201ENST00000393368 SNRPA1P09661 255 aaKnown RBP10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 EIF5P55010 431 aaKnown RBP10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 EIF4A1P60842 406 aaKnown RBP10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 LMOD3Q0VAK6 560 aa10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 KRT24Q2M2I5 525 aa10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 BCL2L12Q9HB09 334 aa10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 TBC1D2BQ9UPU7 963 aa10.07□□□□□ -0.8
HMGB3P1-201ENST00000393368 NBPF26B4DH59 902 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 ZPR1O75312 459 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 DDR1Q08345 913 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 NBPF10Q6P3W6 841 aaKnown RBP10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 SAMD1Q6SPF0 538 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 PELP1Q8IZL8 1130 aaKnown RBP10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 NLGN1Q8N2Q7 840 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 NBPF15Q8N660 670 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 TEX13AQ9BXU3 409 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 NARFQ9UHQ1 456 aa10.06□□□□□ -0.8
HMGB3P1-201ENST00000393368 GIGYF1O75420 1035 aaPredicted RBP10.05□□□□□ -0.8
HMGB3P1-201ENST00000393368 IL6STP40189 918 aaPredicted RBP10.05□□□□□ -0.8
HMGB3P1-201ENST00000393368 BICDL1Q6ZP65 573 aa10.05□□□□□ -0.8
HMGB3P1-201ENST00000393368 FAM9BQ8IZU0 186 aa10.05□□□□□ -0.8
HMGB3P1-201ENST00000393368 NGEFQ8N5V2 710 aa10.05□□□□□ -0.8
HMGB3P1-201ENST00000393368 NFIXQ14938 502 aa10.04□□□□□ -0.8
HMGB3P1-201ENST00000393368 NECTIN2Q92692 538 aa10.04□□□□□ -0.8
HMGB3P1-201ENST00000393368 SALL2Q9Y467 1007 aaPredicted RBP10.04□□□□□ -0.8
HMGB3P1-201ENST00000393368 PARP3Q9Y6F1 533 aa10.04□□□□□ -0.8
HMGB3P1-201ENST00000393368 LAMB4A4D0S4 1761 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 POLRMTO00411 1230 aaKnown RBP10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 CHL1O00533 1208 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 ZBTB22O15209 634 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 ANXA1P04083 346 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 MYL6BP14649 208 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 EIF2S2P20042 333 aaKnown RBP10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 TBC1D9BQ66K14 1250 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 C10orf71Q711Q0 1435 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 DZIP3Q86Y13 1208 aaKnown RBP10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 CD2APQ9Y5K6 639 aa10.03□□□□□ -0.8
HMGB3P1-201ENST00000393368 SCN7AQ01118 1682 aa10.02□□□□□ -0.8
HMGB3P1-201ENST00000393368 A0A087WZG4 1122 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 CAMTA2O94983 1202 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 YBX3P16989 372 aaKnown RBP eCLIP10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 TM4SF1P30408 202 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 GPR162Q16538 588 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 PROSER3Q2NL68 480 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 CCDC24Q8N4L8 307 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 MBIPQ9NS73 344 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 PXDNLA1KZ92 1463 aa10.02□□□□□ -0.81
HMGB3P1-201ENST00000393368 CARMIL3Q8ND23 1372 aa10.01□□□□□ -0.81
HMGB3P1-201ENST00000393368 DSG3P32926 999 aa10.01□□□□□ -0.81
HMGB3P1-201ENST00000393368 TTLL7Q6ZT98 887 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms