RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 RTCBQ9Y3I0 505 aaKnown RBP17.26■□□□□ 0.35
CKAP2-202ENST00000378034 ADRA2BP18089 450 aa17.25■□□□□ 0.35
CKAP2-202ENST00000378034 INTS5Q6P9B9 1019 aaKnown RBP17.25■□□□□ 0.35
CKAP2-202ENST00000378034 SLC16A10Q8TF71 515 aa17.25■□□□□ 0.35
CKAP2-202ENST00000378034 GIGYF1O75420 1035 aaPredicted RBP17.24■□□□□ 0.35
CKAP2-202ENST00000378034 LAMB4A4D0S4 1761 aa17.24■□□□□ 0.35
CKAP2-202ENST00000378034 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.23■□□□□ 0.35
CKAP2-202ENST00000378034 COL23A1Q86Y22 540 aaPredicted RBP17.23■□□□□ 0.35
CKAP2-202ENST00000378034 MBIPQ9NS73 344 aa17.23■□□□□ 0.35
CKAP2-202ENST00000378034 TRAPPC3LQ5T215 181 aa17.22■□□□□ 0.35
CKAP2-202ENST00000378034 SALL2Q9Y467 1007 aaPredicted RBP17.22■□□□□ 0.35
CKAP2-202ENST00000378034 USP16Q9Y5T5 823 aa17.22■□□□□ 0.35
CKAP2-202ENST00000378034 SENP3-EIF4A1A0A087X0R7 540 aa17.22■□□□□ 0.35
CKAP2-202ENST00000378034 PDGFDQ9GZP0 370 aaPredicted RBP17.21■□□□□ 0.35
CKAP2-202ENST00000378034 SOS1Q07889 1333 aaPredicted RBP17.21■□□□□ 0.35
CKAP2-202ENST00000378034 PRAMEF22A3QJZ6 481 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 PHF14O94880 888 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 HOXB7P09629 217 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 AMIGO3Q86WK7 504 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 MTFR1LQ9H019 292 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 ZBTB1Q9Y2K1 713 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 ZNF521Q96K83 1311 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 MSH5O43196 834 aa17.2■□□□□ 0.34
CKAP2-202ENST00000378034 IL6STP40189 918 aaPredicted RBP17.19■□□□□ 0.34
CKAP2-202ENST00000378034 SPON1Q9HCB6 807 aa17.19■□□□□ 0.34
CKAP2-202ENST00000378034 ERBB4Q15303 1308 aa17.19■□□□□ 0.34
CKAP2-202ENST00000378034 A0A087WZG4 1122 aa17.19■□□□□ 0.34
CKAP2-202ENST00000378034 A1BGP04217 495 aa17.19■□□□□ 0.34
CKAP2-202ENST00000378034 CANXP27824 592 aaKnown RBP17.19■□□□□ 0.34
CKAP2-202ENST00000378034 ARHGEF1Q92888 912 aaKnown RBP17.19■□□□□ 0.34
CKAP2-202ENST00000378034 COL24A1Q17RW2 1714 aa17.18■□□□□ 0.34
CKAP2-202ENST00000378034 LRP5O75197 1615 aa17.18■□□□□ 0.34
CKAP2-202ENST00000378034 RFC4P35249 363 aa17.18■□□□□ 0.34
CKAP2-202ENST00000378034 EIF5P55010 431 aaKnown RBP17.18■□□□□ 0.34
CKAP2-202ENST00000378034 COL15A1P39059 1388 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 C4AP0C0L4 1744 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 ZBTB7AO95365 584 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 CHMP4AQ9BY43 222 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 SMIM5Q71RC9 77 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 NPM2Q86SE8 214 aaKnown RBP17.17■□□□□ 0.34
CKAP2-202ENST00000378034 MYH16Q9H6N6 1097 aa17.17■□□□□ 0.34
CKAP2-202ENST00000378034 DUSP27Q5VZP5 1158 aa17.15■□□□□ 0.34
CKAP2-202ENST00000378034 GOLGA2Q08379 1002 aa17.15■□□□□ 0.34
CKAP2-202ENST00000378034 KRT24Q2M2I5 525 aa17.15■□□□□ 0.34
CKAP2-202ENST00000378034 TSR2Q969E8 191 aaKnown RBP17.15■□□□□ 0.34
CKAP2-202ENST00000378034 NBPF26B4DH59 902 aa17.14■□□□□ 0.33
CKAP2-202ENST00000378034 ZPR1O75312 459 aa17.14■□□□□ 0.33
CKAP2-202ENST00000378034 NBPF10Q6P3W6 841 aaKnown RBP17.14■□□□□ 0.33
CKAP2-202ENST00000378034 NBPF15Q8N660 670 aa17.14■□□□□ 0.33
CKAP2-202ENST00000378034 NARFQ9UHQ1 456 aa17.14■□□□□ 0.33
CKAP2-202ENST00000378034 ATF5Q9Y2D1 282 aaPredicted RBP17.14■□□□□ 0.33
CKAP2-202ENST00000378034 USP42Q9H9J4 1324 aaKnown RBP17.14■□□□□ 0.33
CKAP2-202ENST00000378034 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
CKAP2-202ENST00000378034 EIF2S2P20042 333 aaKnown RBP17.13■□□□□ 0.33
CKAP2-202ENST00000378034 NLGN1Q8N2Q7 840 aa17.13■□□□□ 0.33
CKAP2-202ENST00000378034 POLD1P28340 1107 aa17.13■□□□□ 0.33
CKAP2-202ENST00000378034 C8orf58Q8NAV2 365 aa17.13■□□□□ 0.33
CKAP2-202ENST00000378034 E9PSI1 815 aa17.12■□□□□ 0.33
CKAP2-202ENST00000378034 GYS1P13807 737 aa17.12■□□□□ 0.33
CKAP2-202ENST00000378034 PTGER2P43116 358 aa17.12■□□□□ 0.33
CKAP2-202ENST00000378034 HDGFL1Q5TGJ6 251 aa17.12■□□□□ 0.33
CKAP2-202ENST00000378034 SGIP1Q9BQI5 828 aa17.12■□□□□ 0.33
CKAP2-202ENST00000378034 SPINK5Q9NQ38 1064 aaPredicted RBP17.12■□□□□ 0.33
CKAP2-202ENST00000378034 ZNF330Q9Y3S2 320 aaPredicted RBP17.11■□□□□ 0.33
CKAP2-202ENST00000378034 RGL2O15211 777 aa17.11■□□□□ 0.33
CKAP2-202ENST00000378034 PIP4K2AP48426 406 aaPredicted RBP17.11■□□□□ 0.33
CKAP2-202ENST00000378034 DDX21Q9NR30 783 aaKnown RBP eCLIP17.11■□□□□ 0.33
CKAP2-202ENST00000378034 PDIA6Q15084 440 aa17.1■□□□□ 0.33
CKAP2-202ENST00000378034 SRP68Q9UHB9 627 aaKnown RBP17.1■□□□□ 0.33
CKAP2-202ENST00000378034 SCN7AQ01118 1682 aa17.1■□□□□ 0.33
CKAP2-202ENST00000378034 HNRNPUQ00839 825 aaKnown RBP eCLIP17.09■□□□□ 0.33
CKAP2-202ENST00000378034 TWISTNBQ3B726 338 aaPredicted RBP17.09■□□□□ 0.33
CKAP2-202ENST00000378034 USPL1Q5W0Q7 1092 aa17.09■□□□□ 0.33
CKAP2-202ENST00000378034 MSL1Q68DK7 614 aa17.09■□□□□ 0.33
CKAP2-202ENST00000378034 DZIP3Q86Y13 1208 aaKnown RBP17.09■□□□□ 0.33
CKAP2-202ENST00000378034 DBF4Q9UBU7 674 aaPredicted RBP17.09■□□□□ 0.33
CKAP2-202ENST00000378034 ELL2O00472 640 aaPredicted RBP17.09■□□□□ 0.33
CKAP2-202ENST00000378034 MYL6BP14649 208 aa17.09■□□□□ 0.33
CKAP2-202ENST00000378034 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
CKAP2-202ENST00000378034 TBC1D2BQ9UPU7 963 aa17.09■□□□□ 0.33
CKAP2-202ENST00000378034 BCORQ6W2J9 1755 aa17.08■□□□□ 0.33
CKAP2-202ENST00000378034 CCDC30Q5VVM6 783 aa17.08■□□□□ 0.33
CKAP2-202ENST00000378034 TSPYL6Q8N831 410 aa17.08■□□□□ 0.33
CKAP2-202ENST00000378034 CAMTA2O94983 1202 aa17.08■□□□□ 0.32
CKAP2-202ENST00000378034 EXOSC9Q06265 439 aaKnown RBP17.08■□□□□ 0.32
CKAP2-202ENST00000378034 CLEC4GQ6UXB4 293 aa17.08■□□□□ 0.32
CKAP2-202ENST00000378034 LRP10Q7Z4F1 713 aa17.08■□□□□ 0.32
CKAP2-202ENST00000378034 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
CKAP2-202ENST00000378034 ARXQ96QS3 562 aa17.08■□□□□ 0.32
CKAP2-202ENST00000378034 FKBP8Q14318 412 aa17.07■□□□□ 0.32
CKAP2-202ENST00000378034 BCL2L12Q9HB09 334 aa17.07■□□□□ 0.32
CKAP2-202ENST00000378034 HYPKQ9NX55 129 aa17.07■□□□□ 0.32
CKAP2-202ENST00000378034 CHPF2Q9P2E5 772 aa17.07■□□□□ 0.32
CKAP2-202ENST00000378034 PPP1R1BQ9UD71 204 aaPredicted RBP17.07■□□□□ 0.32
CKAP2-202ENST00000378034 ERVV-1B6SEH8 477 aa17.06■□□□□ 0.32
CKAP2-202ENST00000378034 KIF6Q6ZMV9 814 aa17.06■□□□□ 0.32
CKAP2-202ENST00000378034 TRMT2AQ8IZ69 625 aaKnown RBP17.06■□□□□ 0.32
CKAP2-202ENST00000378034 ZNF652Q9Y2D9 606 aa17.06■□□□□ 0.32
CKAP2-202ENST00000378034 VAMP4O75379 141 aa17.06■□□□□ 0.32
CKAP2-202ENST00000378034 PROSER3Q2NL68 480 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms