RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ZBTB7AO95365 584 aa19.33■□□□□ 0.69
COL9A1-204ENST00000370496 EIF4A1P60842 406 aaKnown RBP19.33■□□□□ 0.69
COL9A1-204ENST00000370496 AMIGO3Q86WK7 504 aa19.33■□□□□ 0.69
COL9A1-204ENST00000370496 WWC1Q8IX03 1113 aa19.33■□□□□ 0.69
COL9A1-204ENST00000370496 CFAP44Q96MT7 982 aa19.33■□□□□ 0.69
COL9A1-204ENST00000370496 IFT57Q9NWB7 429 aa19.33■□□□□ 0.69
COL9A1-204ENST00000370496 GNAI1P63096 354 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 NCBP3Q53F19 620 aaKnown RBP19.32■□□□□ 0.68
COL9A1-204ENST00000370496 COL23A1Q86Y22 540 aaPredicted RBP19.32■□□□□ 0.68
COL9A1-204ENST00000370496 ZBTB1Q9Y2K1 713 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 PRAMEF22A3QJZ6 481 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 CHL1O00533 1208 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 RPS6KA4O75676 772 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 ADRA2BP18089 450 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 INTS5Q6P9B9 1019 aaKnown RBP19.32■□□□□ 0.68
COL9A1-204ENST00000370496 SMIM5Q71RC9 77 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 NGEFQ8N5V2 710 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 MTFR1LQ9H019 292 aa19.32■□□□□ 0.68
COL9A1-204ENST00000370496 COL15A1P39059 1388 aa19.31■□□□□ 0.68
COL9A1-204ENST00000370496 SOS1Q07889 1333 aaPredicted RBP19.3■□□□□ 0.68
COL9A1-204ENST00000370496 SCN7AQ01118 1682 aa19.3■□□□□ 0.68
COL9A1-204ENST00000370496 CANXP27824 592 aaKnown RBP19.3■□□□□ 0.68
COL9A1-204ENST00000370496 TRAPPC3LQ5T215 181 aa19.3■□□□□ 0.68
COL9A1-204ENST00000370496 SLC16A10Q8TF71 515 aa19.3■□□□□ 0.68
COL9A1-204ENST00000370496 SPON1Q9HCB6 807 aa19.3■□□□□ 0.68
COL9A1-204ENST00000370496 MBIPQ9NS73 344 aa19.3■□□□□ 0.68
COL9A1-204ENST00000370496 ZNF330Q9Y3S2 320 aaPredicted RBP19.3■□□□□ 0.68
COL9A1-204ENST00000370496 COL24A1Q17RW2 1714 aa19.29■□□□□ 0.68
COL9A1-204ENST00000370496 GIGYF1O75420 1035 aaPredicted RBP19.29■□□□□ 0.68
COL9A1-204ENST00000370496 USP16Q9Y5T5 823 aa19.29■□□□□ 0.68
COL9A1-204ENST00000370496 RFC4P35249 363 aa19.28■□□□□ 0.68
COL9A1-204ENST00000370496 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
COL9A1-204ENST00000370496 ATF5Q9Y2D1 282 aaPredicted RBP19.28■□□□□ 0.68
COL9A1-204ENST00000370496 IL16Q14005 1332 aa19.27■□□□□ 0.68
COL9A1-204ENST00000370496 BCORQ6W2J9 1755 aa19.27■□□□□ 0.68
COL9A1-204ENST00000370496 A1BGP04217 495 aa19.27■□□□□ 0.68
COL9A1-204ENST00000370496 ZNF853P0CG23 659 aa19.27■□□□□ 0.68
COL9A1-204ENST00000370496 MSL1Q68DK7 614 aa19.27■□□□□ 0.68
COL9A1-204ENST00000370496 WDR63Q8IWG1 891 aa19.26■□□□□ 0.67
COL9A1-204ENST00000370496 ARHGEF1Q92888 912 aaKnown RBP19.26■□□□□ 0.67
COL9A1-204ENST00000370496 PIP4K2AP48426 406 aaPredicted RBP19.25■□□□□ 0.67
COL9A1-204ENST00000370496 KRT24Q2M2I5 525 aa19.25■□□□□ 0.67
COL9A1-204ENST00000370496 TSR2Q969E8 191 aaKnown RBP19.25■□□□□ 0.67
COL9A1-204ENST00000370496 POLD1P28340 1107 aa19.24■□□□□ 0.67
COL9A1-204ENST00000370496 IL6STP40189 918 aaPredicted RBP19.24■□□□□ 0.67
COL9A1-204ENST00000370496 PPP1R1BQ9UD71 204 aaPredicted RBP19.24■□□□□ 0.67
COL9A1-204ENST00000370496 USP42Q9H9J4 1324 aaKnown RBP19.24■□□□□ 0.67
COL9A1-204ENST00000370496 A0A087WZG4 1122 aa19.23■□□□□ 0.67
COL9A1-204ENST00000370496 EIF2S2P20042 333 aaKnown RBP19.23■□□□□ 0.67
COL9A1-204ENST00000370496 FANCIQ9NVI1 1328 aa19.23■□□□□ 0.67
COL9A1-204ENST00000370496 ZPR1O75312 459 aa19.22■□□□□ 0.67
COL9A1-204ENST00000370496 HOXB7P09629 217 aa19.22■□□□□ 0.67
COL9A1-204ENST00000370496 EIF5P55010 431 aaKnown RBP19.22■□□□□ 0.67
COL9A1-204ENST00000370496 SRP68Q9UHB9 627 aaKnown RBP19.22■□□□□ 0.67
COL9A1-204ENST00000370496 ERBB4Q15303 1308 aa19.22■□□□□ 0.67
COL9A1-204ENST00000370496 HDGFL1Q5TGJ6 251 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 DUSP27Q5VZP5 1158 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 NECTIN2Q92692 538 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 ARXQ96QS3 562 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 MYH16Q9H6N6 1097 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 ZNF521Q96K83 1311 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 SRCAPQ6ZRS2 3230 aa19.21■□□□□ 0.67
COL9A1-204ENST00000370496 NBPF26B4DH59 902 aa19.2■□□□□ 0.66
COL9A1-204ENST00000370496 PTGER2P43116 358 aa19.2■□□□□ 0.66
COL9A1-204ENST00000370496 NBPF10Q6P3W6 841 aaKnown RBP19.2■□□□□ 0.66
COL9A1-204ENST00000370496 NBPF15Q8N660 670 aa19.2■□□□□ 0.66
COL9A1-204ENST00000370496 GYS1P13807 737 aa19.19■□□□□ 0.66
COL9A1-204ENST00000370496 MYL6BP14649 208 aa19.19■□□□□ 0.66
COL9A1-204ENST00000370496 USPL1Q5W0Q7 1092 aa19.19■□□□□ 0.66
COL9A1-204ENST00000370496 NARFQ9UHQ1 456 aa19.19■□□□□ 0.66
COL9A1-204ENST00000370496 ELL2O00472 640 aaPredicted RBP19.19■□□□□ 0.66
COL9A1-204ENST00000370496 DZIP3Q86Y13 1208 aaKnown RBP19.19■□□□□ 0.66
COL9A1-204ENST00000370496 SGIP1Q9BQI5 828 aa19.19■□□□□ 0.66
COL9A1-204ENST00000370496 HNRNPUQ00839 825 aaKnown RBP eCLIP19.18■□□□□ 0.66
COL9A1-204ENST00000370496 GOLGA2Q08379 1002 aa19.18■□□□□ 0.66
COL9A1-204ENST00000370496 NLGN1Q8N2Q7 840 aa19.18■□□□□ 0.66
COL9A1-204ENST00000370496 TBC1D2BQ9UPU7 963 aa19.18■□□□□ 0.66
COL9A1-204ENST00000370496 C8orf58Q8NAV2 365 aa19.17■□□□□ 0.66
COL9A1-204ENST00000370496 MMP10P09238 476 aa19.16■□□□□ 0.66
COL9A1-204ENST00000370496 FKBP8Q14318 412 aa19.16■□□□□ 0.66
COL9A1-204ENST00000370496 KIF6Q6ZMV9 814 aa19.16■□□□□ 0.66
COL9A1-204ENST00000370496 SPINK5Q9NQ38 1064 aaPredicted RBP19.16■□□□□ 0.66
COL9A1-204ENST00000370496 CHPF2Q9P2E5 772 aa19.16■□□□□ 0.66
COL9A1-204ENST00000370496 E9PSI1 815 aa19.15■□□□□ 0.66
COL9A1-204ENST00000370496 ANXA1P04083 346 aa19.15■□□□□ 0.66
COL9A1-204ENST00000370496 TWISTNBQ3B726 338 aaPredicted RBP19.15■□□□□ 0.66
COL9A1-204ENST00000370496 KLHL34Q8N239 644 aa19.15■□□□□ 0.66
COL9A1-204ENST00000370496 ZNF652Q9Y2D9 606 aa19.15■□□□□ 0.66
COL9A1-204ENST00000370496 CAMTA2O94983 1202 aa19.14■□□□□ 0.65
COL9A1-204ENST00000370496 PROSER3Q2NL68 480 aa19.14■□□□□ 0.65
COL9A1-204ENST00000370496 TSPYL6Q8N831 410 aa19.14■□□□□ 0.65
COL9A1-204ENST00000370496 CHMP4AQ9BY43 222 aa19.14■□□□□ 0.65
COL9A1-204ENST00000370496 DDX21Q9NR30 783 aaKnown RBP eCLIP19.14■□□□□ 0.65
COL9A1-204ENST00000370496 DBF4Q9UBU7 674 aaPredicted RBP19.14■□□□□ 0.65
COL9A1-204ENST00000370496 EXOSC9Q06265 439 aaKnown RBP19.13■□□□□ 0.65
COL9A1-204ENST00000370496 NUP98P52948 1817 aa19.12■□□□□ 0.65
COL9A1-204ENST00000370496 ANKRD36CQ5JPF3 1778 aa19.12■□□□□ 0.65
COL9A1-204ENST00000370496 PDIA6Q15084 440 aa19.12■□□□□ 0.65
COL9A1-204ENST00000370496 CCDC30Q5VVM6 783 aa19.12■□□□□ 0.65
COL9A1-204ENST00000370496 BCL2L12Q9HB09 334 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms