RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 RPS6KA4O75676 772 aa19.74■□□□□ 0.75
SMPDL3A-201ENST00000368440 LAS1LQ9Y4W2 734 aaKnown RBP19.74■□□□□ 0.75
SMPDL3A-201ENST00000368440 FLAD1Q8NFF5 587 aa19.73■□□□□ 0.75
SMPDL3A-201ENST00000368440 MTFR1LQ9H019 292 aa19.73■□□□□ 0.75
SMPDL3A-201ENST00000368440 USP16Q9Y5T5 823 aa19.73■□□□□ 0.75
SMPDL3A-201ENST00000368440 SPON1Q9HCB6 807 aa19.73■□□□□ 0.75
SMPDL3A-201ENST00000368440 SALL2Q9Y467 1007 aaPredicted RBP19.73■□□□□ 0.75
SMPDL3A-201ENST00000368440 CHL1O00533 1208 aa19.72■□□□□ 0.75
SMPDL3A-201ENST00000368440 SNRPA1P09661 255 aaKnown RBP19.72■□□□□ 0.75
SMPDL3A-201ENST00000368440 SOS1Q07889 1333 aaPredicted RBP19.72■□□□□ 0.75
SMPDL3A-201ENST00000368440 STARD3NLO95772 234 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 PTGER2P43116 358 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 SLC16A10Q8TF71 515 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 ARHGEF1Q92888 912 aaKnown RBP19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 TEX13AQ9BXU3 409 aaPredicted RBP19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 BABAM1Q9NWV8 329 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 A1BGP04217 495 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 CANXP27824 592 aaKnown RBP19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 CCDC27Q2M243 656 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 MSL1Q68DK7 614 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 WWC1Q8IX03 1113 aa19.71■□□□□ 0.75
SMPDL3A-201ENST00000368440 GIGYF1O75420 1035 aaPredicted RBP19.7■□□□□ 0.74
SMPDL3A-201ENST00000368440 TRAPPC3LQ5T215 181 aa19.7■□□□□ 0.74
SMPDL3A-201ENST00000368440 SGIP1Q9BQI5 828 aa19.7■□□□□ 0.74
SMPDL3A-201ENST00000368440 ZNF853P0CG23 659 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 PIP4K2AP48426 406 aaPredicted RBP19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 KRT24Q2M2I5 525 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 CFAP44Q96MT7 982 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 ADRA2BP18089 450 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 MBIPQ9NS73 344 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 COL15A1P39059 1388 aa19.69■□□□□ 0.74
SMPDL3A-201ENST00000368440 IFT57Q9NWB7 429 aa19.67■□□□□ 0.74
SMPDL3A-201ENST00000368440 SRP68Q9UHB9 627 aaKnown RBP19.67■□□□□ 0.74
SMPDL3A-201ENST00000368440 NCBP3Q53F19 620 aaKnown RBP19.67■□□□□ 0.74
SMPDL3A-201ENST00000368440 RFC4P35249 363 aa19.66■□□□□ 0.74
SMPDL3A-201ENST00000368440 CALD1Q05682 793 aaKnown RBP19.66■□□□□ 0.74
SMPDL3A-201ENST00000368440 SCN7AQ01118 1682 aa19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 EIF5P55010 431 aaKnown RBP19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 GNAI1P63096 354 aa19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 NBPF26B4DH59 902 aa19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 NBPF10Q6P3W6 841 aaKnown RBP19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 NBPF15Q8N660 670 aa19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 ZNF330Q9Y3S2 320 aaPredicted RBP19.65■□□□□ 0.74
SMPDL3A-201ENST00000368440 USP42Q9H9J4 1324 aaKnown RBP19.64■□□□□ 0.74
SMPDL3A-201ENST00000368440 BCORQ6W2J9 1755 aa19.64■□□□□ 0.73
SMPDL3A-201ENST00000368440 GYS1P13807 737 aa19.63■□□□□ 0.73
SMPDL3A-201ENST00000368440 IL6STP40189 918 aaPredicted RBP19.63■□□□□ 0.73
SMPDL3A-201ENST00000368440 TSR2Q969E8 191 aaKnown RBP19.63■□□□□ 0.73
SMPDL3A-201ENST00000368440 PPP1R1BQ9UD71 204 aaPredicted RBP19.62■□□□□ 0.73
SMPDL3A-201ENST00000368440 USPL1Q5W0Q7 1092 aa19.61■□□□□ 0.73
SMPDL3A-201ENST00000368440 IL16Q14005 1332 aa19.61■□□□□ 0.73
SMPDL3A-201ENST00000368440 EIF2S2P20042 333 aaKnown RBP19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 POLD1P28340 1107 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 NECTIN2Q92692 538 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 SPINK5Q9NQ38 1064 aaPredicted RBP19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 NARFQ9UHQ1 456 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 FKBP8Q14318 412 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 WDR63Q8IWG1 891 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 ARXQ96QS3 562 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 BCL2L12Q9HB09 334 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 TBC1D2BQ9UPU7 963 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 ZNF521Q96K83 1311 aa19.6■□□□□ 0.73
SMPDL3A-201ENST00000368440 ZPR1O75312 459 aa19.58■□□□□ 0.73
SMPDL3A-201ENST00000368440 DUSP27Q5VZP5 1158 aa19.58■□□□□ 0.73
SMPDL3A-201ENST00000368440 NGEFQ8N5V2 710 aa19.58■□□□□ 0.73
SMPDL3A-201ENST00000368440 C8orf58Q8NAV2 365 aa19.58■□□□□ 0.73
SMPDL3A-201ENST00000368440 ELL2O00472 640 aaPredicted RBP19.58■□□□□ 0.72
SMPDL3A-201ENST00000368440 MYL6BP14649 208 aa19.58■□□□□ 0.72
SMPDL3A-201ENST00000368440 FANCIQ9NVI1 1328 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 A0A087WZG4 1122 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 ANXA1P04083 346 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 MMP10P09238 476 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 PDIA6Q15084 440 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 PROSER3Q2NL68 480 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 NLGN1Q8N2Q7 840 aa19.57■□□□□ 0.72
SMPDL3A-201ENST00000368440 DZIP3Q86Y13 1208 aaKnown RBP19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 TSPYL6Q8N831 410 aa19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 ERBB4Q15303 1308 aa19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 CAMTA2O94983 1202 aa19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 HOXB7P09629 217 aa19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 LRP10Q7Z4F1 713 aa19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 FHDC1Q9C0D6 1143 aaPredicted RBP19.56■□□□□ 0.72
SMPDL3A-201ENST00000368440 AFDNP55196 1824 aaKnown RBP19.55■□□□□ 0.72
SMPDL3A-201ENST00000368440 HDGFL1Q5TGJ6 251 aa19.55■□□□□ 0.72
SMPDL3A-201ENST00000368440 YTHDC1Q96MU7 727 aaKnown RBP19.55■□□□□ 0.72
SMPDL3A-201ENST00000368440 DDR1Q08345 913 aa19.54■□□□□ 0.72
SMPDL3A-201ENST00000368440 NPM2Q86SE8 214 aaKnown RBP19.54■□□□□ 0.72
SMPDL3A-201ENST00000368440 TTLL7Q6ZT98 887 aa19.54■□□□□ 0.72
SMPDL3A-201ENST00000368440 KLHL34Q8N239 644 aa19.54■□□□□ 0.72
SMPDL3A-201ENST00000368440 CHPF2Q9P2E5 772 aa19.54■□□□□ 0.72
SMPDL3A-201ENST00000368440 NUP98P52948 1817 aa19.53■□□□□ 0.72
SMPDL3A-201ENST00000368440 TM4SF1P30408 202 aa19.52■□□□□ 0.72
SMPDL3A-201ENST00000368440 NFIXQ14938 502 aa19.52■□□□□ 0.72
SMPDL3A-201ENST00000368440 NRXN2Q9P2S2 1712 aa19.52■□□□□ 0.72
SMPDL3A-201ENST00000368440 KIF13BQ9NQT8 1826 aa19.52■□□□□ 0.72
SMPDL3A-201ENST00000368440 TBC1D9BQ66K14 1250 aa19.52■□□□□ 0.71
SMPDL3A-201ENST00000368440 BICDL1Q6ZP65 573 aa19.51■□□□□ 0.71
SMPDL3A-201ENST00000368440 SYT17Q9BSW7 474 aa19.51■□□□□ 0.71
SMPDL3A-201ENST00000368440 DDX21Q9NR30 783 aaKnown RBP eCLIP19.51■□□□□ 0.71
SMPDL3A-201ENST00000368440 POLRMTO00411 1230 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms