RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 MSH5O43196 834 aa17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 PHF14O94880 888 aa17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 EIF4A1P60842 406 aaKnown RBP17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 NGEFQ8N5V2 710 aa17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 ARHGEF1Q92888 912 aaKnown RBP17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 ATF5Q9Y2D1 282 aaPredicted RBP17.12■□□□□ 0.33
HLA-DQA1-201ENST00000343139 POLD1P28340 1107 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 MIS18AQ9NYP9 233 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 TSPYL4Q9UJ04 414 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 COL24A1Q17RW2 1714 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 CFAP44Q96MT7 982 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 ZBTB1Q9Y2K1 713 aa17.11■□□□□ 0.33
HLA-DQA1-201ENST00000343139 GIGYF1O75420 1035 aaPredicted RBP17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 RFC4P35249 363 aa17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 IL6STP40189 918 aaPredicted RBP17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 EIF5P55010 431 aaKnown RBP17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 DIEXFQ68CQ4 756 aaKnown RBP17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 KDM3BQ7LBC6 1761 aa17.1■□□□□ 0.33
HLA-DQA1-201ENST00000343139 MYH14Q7Z406 1995 aaKnown RBP17.09■□□□□ 0.33
HLA-DQA1-201ENST00000343139 ZNF853P0CG23 659 aa17.09■□□□□ 0.33
HLA-DQA1-201ENST00000343139 NLGN1Q8N2Q7 840 aa17.09■□□□□ 0.33
HLA-DQA1-201ENST00000343139 USP16Q9Y5T5 823 aa17.09■□□□□ 0.33
HLA-DQA1-201ENST00000343139 A0A087WZG4 1122 aa17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 SMIM5Q71RC9 77 aa17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 ARXQ96QS3 562 aa17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 IFT57Q9NWB7 429 aa17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 COL15A1P39059 1388 aa17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 USP42Q9H9J4 1324 aaKnown RBP17.08■□□□□ 0.32
HLA-DQA1-201ENST00000343139 GYS1P13807 737 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 GNAI1P63096 354 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 WWC1Q8IX03 1113 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 FAM9BQ8IZU0 186 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 NARFQ9UHQ1 456 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 ERBB4Q15303 1308 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 PRAMEF22A3QJZ6 481 aa17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 CANXP27824 592 aaKnown RBP17.06■□□□□ 0.32
HLA-DQA1-201ENST00000343139 IL16Q14005 1332 aa17.05■□□□□ 0.32
HLA-DQA1-201ENST00000343139 RGL2O15211 777 aa17.05■□□□□ 0.32
HLA-DQA1-201ENST00000343139 A1BGP04217 495 aa17.05■□□□□ 0.32
HLA-DQA1-201ENST00000343139 HOXB7P09629 217 aa17.05■□□□□ 0.32
HLA-DQA1-201ENST00000343139 ZPR1O75312 459 aa17.04■□□□□ 0.32
HLA-DQA1-201ENST00000343139 MSL1Q68DK7 614 aa17.04■□□□□ 0.32
HLA-DQA1-201ENST00000343139 NPM2Q86SE8 214 aaKnown RBP17.03■□□□□ 0.32
HLA-DQA1-201ENST00000343139 WDR63Q8IWG1 891 aa17.02■□□□□ 0.32
HLA-DQA1-201ENST00000343139 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
HLA-DQA1-201ENST00000343139 NBPF26B4DH59 902 aa17.02■□□□□ 0.31
HLA-DQA1-201ENST00000343139 NBPF10Q6P3W6 841 aaKnown RBP17.02■□□□□ 0.31
HLA-DQA1-201ENST00000343139 NBPF15Q8N660 670 aa17.02■□□□□ 0.31
HLA-DQA1-201ENST00000343139 LAS1LQ9Y4W2 734 aaKnown RBP17.02■□□□□ 0.31
HLA-DQA1-201ENST00000343139 C4AP0C0L4 1744 aa17.01■□□□□ 0.31
HLA-DQA1-201ENST00000343139 USPL1Q5W0Q7 1092 aa17.01■□□□□ 0.31
HLA-DQA1-201ENST00000343139 SYT17Q9BSW7 474 aa17.01■□□□□ 0.31
HLA-DQA1-201ENST00000343139 FHDC1Q9C0D6 1143 aaPredicted RBP17.01■□□□□ 0.31
HLA-DQA1-201ENST00000343139 SRP68Q9UHB9 627 aaKnown RBP17.01■□□□□ 0.31
HLA-DQA1-201ENST00000343139 MMP10P09238 476 aa17■□□□□ 0.31
HLA-DQA1-201ENST00000343139 FKBP8Q14318 412 aa17■□□□□ 0.31
HLA-DQA1-201ENST00000343139 CHMP4AQ9BY43 222 aa17■□□□□ 0.31
HLA-DQA1-201ENST00000343139 CD2APQ9Y5K6 639 aa17■□□□□ 0.31
HLA-DQA1-201ENST00000343139 LAMB4A4D0S4 1761 aa17■□□□□ 0.31
HLA-DQA1-201ENST00000343139 TM4SF1P30408 202 aa16.99■□□□□ 0.31
HLA-DQA1-201ENST00000343139 CLEC4GQ6UXB4 293 aa16.99■□□□□ 0.31
HLA-DQA1-201ENST00000343139 BCL2L12Q9HB09 334 aa16.99■□□□□ 0.31
HLA-DQA1-201ENST00000343139 CAMTA2O94983 1202 aa16.98■□□□□ 0.31
HLA-DQA1-201ENST00000343139 DZIP3Q86Y13 1208 aaKnown RBP16.98■□□□□ 0.31
HLA-DQA1-201ENST00000343139 PARP3Q9Y6F1 533 aa16.98■□□□□ 0.31
HLA-DQA1-201ENST00000343139 PDIA6Q15084 440 aa16.97■□□□□ 0.31
HLA-DQA1-201ENST00000343139 MIER1Q8N108 512 aa16.97■□□□□ 0.31
HLA-DQA1-201ENST00000343139 TBC1D2BQ9UPU7 963 aa16.97■□□□□ 0.31
HLA-DQA1-201ENST00000343139 ZNF330Q9Y3S2 320 aaPredicted RBP16.97■□□□□ 0.31
HLA-DQA1-201ENST00000343139 ERVV-1B6SEH8 477 aa16.96■□□□□ 0.31
HLA-DQA1-201ENST00000343139 DUSP27Q5VZP5 1158 aa16.96■□□□□ 0.31
HLA-DQA1-201ENST00000343139 LRP10Q7Z4F1 713 aa16.96■□□□□ 0.31
HLA-DQA1-201ENST00000343139 ZNF521Q96K83 1311 aa16.96■□□□□ 0.31
HLA-DQA1-201ENST00000343139 POLRMTO00411 1230 aaKnown RBP16.95■□□□□ 0.3
HLA-DQA1-201ENST00000343139 PIP4K2AP48426 406 aaPredicted RBP16.95■□□□□ 0.3
HLA-DQA1-201ENST00000343139 KRT24Q2M2I5 525 aa16.95■□□□□ 0.3
HLA-DQA1-201ENST00000343139 ZNF652Q9Y2D9 606 aa16.95■□□□□ 0.3
HLA-DQA1-201ENST00000343139 EIF2S2P20042 333 aaKnown RBP16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 DDR1Q08345 913 aa16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 NFIXQ14938 502 aa16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 DDX21Q9NR30 783 aaKnown RBP eCLIP16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 SCN7AQ01118 1682 aa16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 HDGFL1Q5TGJ6 251 aa16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 DBF4Q9UBU7 674 aaPredicted RBP16.94■□□□□ 0.3
HLA-DQA1-201ENST00000343139 C10orf71Q711Q0 1435 aa16.93■□□□□ 0.3
HLA-DQA1-201ENST00000343139 MAP3K15Q6ZN16 1313 aa16.92■□□□□ 0.3
HLA-DQA1-201ENST00000343139 MYL6BP14649 208 aa16.92■□□□□ 0.3
HLA-DQA1-201ENST00000343139 TGFB2P61812 414 aa16.92■□□□□ 0.3
HLA-DQA1-201ENST00000343139 C8orf58Q8NAV2 365 aa16.92■□□□□ 0.3
HLA-DQA1-201ENST00000343139 MYH16Q9H6N6 1097 aa16.92■□□□□ 0.3
HLA-DQA1-201ENST00000343139 CARMIL3Q8ND23 1372 aa16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 FANCIQ9NVI1 1328 aa16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 TBC1D9BQ66K14 1250 aa16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 KIF6Q6ZMV9 814 aa16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 TSR2Q969E8 191 aaKnown RBP16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 SALL2Q9Y467 1007 aaPredicted RBP16.91■□□□□ 0.3
HLA-DQA1-201ENST00000343139 SENP3-EIF4A1A0A087X0R7 540 aa16.9■□□□□ 0.3
HLA-DQA1-201ENST00000343139 GOLGA2Q08379 1002 aa16.9■□□□□ 0.3
HLA-DQA1-201ENST00000343139 SETDB2Q96T68 719 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms