RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
CCDC54-201ENST00000261058 WDR44Q5JSH3 913 aa8.11□□□□□ -1.11
CCDC54-201ENST00000261058 EGFL7Q9UHF1 273 aa8.11□□□□□ -1.11
CCDC54-201ENST00000261058 NOS2P35228 1153 aa8.1□□□□□ -1.11
CCDC54-201ENST00000261058 SCARF1Q14162 830 aa8.1□□□□□ -1.11
CCDC54-201ENST00000261058 C6orf118Q5T5N4 469 aa8.1□□□□□ -1.11
CCDC54-201ENST00000261058 ZFP42Q96MM3 310 aa8.1□□□□□ -1.11
CCDC54-201ENST00000261058 NIFKQ9BYG3 293 aaKnown RBP8.1□□□□□ -1.11
CCDC54-201ENST00000261058 POLMQ9NP87 494 aaPredicted RBP8.1□□□□□ -1.11
CCDC54-201ENST00000261058 SEPT3Q9UH03 358 aa8.1□□□□□ -1.11
CCDC54-201ENST00000261058 SERTM1A2A2V5 107 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 TTLL8A6PVC2 850 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 SERPINB4P48594 390 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 C4orf17Q53FE4 359 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 SLC27A3Q5K4L6 730 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 TMEM214Q6NUQ4 689 aaKnown RBP8.09□□□□□ -1.11
CCDC54-201ENST00000261058 L3MBTL2Q969R5 705 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 MYO19Q96H55 970 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 ATP13A2Q9NQ11 1180 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 MTMR7Q9Y216 660 aa8.09□□□□□ -1.11
CCDC54-201ENST00000261058 ST8SIA5O15466 376 aa8.08□□□□□ -1.12
CCDC54-201ENST00000261058 SH3PXD2AQ5TCZ1 1133 aa8.08□□□□□ -1.12
CCDC54-201ENST00000261058 C7orf43Q8WVR3 580 aa8.08□□□□□ -1.12
CCDC54-201ENST00000261058 MKNK1Q9BUB5 465 aa8.08□□□□□ -1.12
CCDC54-201ENST00000261058 QTRT2Q9H974 415 aaKnown RBP8.08□□□□□ -1.12
CCDC54-201ENST00000261058 SOWAHDA6NJG2 315 aa8.07□□□□□ -1.12
CCDC54-201ENST00000261058 GNASQ5JWF2 1037 aa8.07□□□□□ -1.12
CCDC54-201ENST00000261058 NBPF10Q6P3W6 841 aaKnown RBP8.07□□□□□ -1.12
CCDC54-201ENST00000261058 SND1Q7KZF4 910 aaKnown RBP eCLIP8.07□□□□□ -1.12
CCDC54-201ENST00000261058 LYSMD3Q7Z3D4 306 aa8.07□□□□□ -1.12
CCDC54-201ENST00000261058 CHMP7Q8WUX9 453 aaPredicted RBP8.07□□□□□ -1.12
CCDC54-201ENST00000261058 GZF1Q9H116 711 aaPredicted RBP8.07□□□□□ -1.12
CCDC54-201ENST00000261058 CABP1Q9NZU7 370 aa8.07□□□□□ -1.12
CCDC54-201ENST00000261058 NPR3P17342 541 aa8.06□□□□□ -1.12
CCDC54-201ENST00000261058 ECM1Q16610 540 aa8.06□□□□□ -1.12
CCDC54-201ENST00000261058 C1orf53Q5VUE5 145 aa8.06□□□□□ -1.12
CCDC54-201ENST00000261058 HELQQ8TDG4 1101 aa8.06□□□□□ -1.12
CCDC54-201ENST00000261058 GTF3C2Q8WUA4 911 aaPredicted RBP8.06□□□□□ -1.12
CCDC54-201ENST00000261058 DACH1Q9UI36 760 aa8.06□□□□□ -1.12
CCDC54-201ENST00000261058 DNMT3AQ9Y6K1 912 aaPredicted RBP8.06□□□□□ -1.12
CCDC54-201ENST00000261058 ICMTO60725 284 aa8.05□□□□□ -1.12
CCDC54-201ENST00000261058 GTF2E1P29083 439 aaPredicted RBP8.05□□□□□ -1.12
CCDC54-201ENST00000261058 SAP130Q9H0E3 1048 aa8.05□□□□□ -1.12
CCDC54-201ENST00000261058 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.05□□□□□ -1.12
CCDC54-201ENST00000261058 ZDHHC3Q9NYG2 299 aa8.05□□□□□ -1.12
CCDC54-201ENST00000261058 DNMT3LQ9UJW3 386 aa8.05□□□□□ -1.12
CCDC54-201ENST00000261058 CHMP3Q9Y3E7 222 aa8.05□□□□□ -1.12
CCDC54-201ENST00000261058 POU4F2Q12837 409 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 SF3B2Q13435 895 aaKnown RBP8.04□□□□□ -1.12
CCDC54-201ENST00000261058 COX20Q5RI15 118 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 C16orf46Q6P387 395 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 ALDH16A1Q8IZ83 802 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 PODXL2Q9NZ53 605 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 LRFN2Q9ULH4 789 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 PARP3Q9Y6F1 533 aa8.04□□□□□ -1.12
CCDC54-201ENST00000261058 POTECB2RU33 542 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 TNFRSF10BO14763 440 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 ATP4AP20648 1035 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 TXLNAP40222 546 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 PLA2G4AP47712 749 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 RTN1Q16799 776 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 PRICKLE2Q7Z3G6 844 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 VTI1AQ96AJ9 217 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 ZNF232Q9UNY5 417 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 NAA30Q147X3 362 aaPredicted RBP8.03□□□□□ -1.12
CCDC54-201ENST00000261058 PHACTR1Q9C0D0 580 aa8.03□□□□□ -1.12
CCDC54-201ENST00000261058 GPC6Q9Y625 555 aaPredicted RBP8.03□□□□□ -1.12
CCDC54-201ENST00000261058 SENP3-EIF4A1A0A087X0R7 540 aa8.02□□□□□ -1.13
CCDC54-201ENST00000261058 FKBP4Q02790 459 aaKnown RBP eCLIP8.02□□□□□ -1.13
CCDC54-201ENST00000261058 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.02□□□□□ -1.13
CCDC54-201ENST00000261058 HCN4Q9Y3Q4 1203 aa8.02□□□□□ -1.13
CCDC54-201ENST00000261058 A0A1B0GTH6 734 aa8.01□□□□□ -1.13
CCDC54-201ENST00000261058 FIGNL2A6NMB9 653 aa8.01□□□□□ -1.13
CCDC54-201ENST00000261058 ZNF211Q13398 564 aaPredicted RBP8.01□□□□□ -1.13
CCDC54-201ENST00000261058 NBPF1Q3BBV0 1214 aa8.01□□□□□ -1.13
CCDC54-201ENST00000261058 TRIM47Q96LD4 638 aa8.01□□□□□ -1.13
CCDC54-201ENST00000261058 ABL1P00519 1130 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 PHKA2P46019 1235 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 ARHGAP4P98171 946 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 MTMR3Q13615 1198 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 SENP2Q9HC62 589 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 DYRK1BQ9Y463 629 aa8□□□□□ -1.13
CCDC54-201ENST00000261058 H3BRB1 525 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 RHOQP17081 205 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 FAM26DQ5JW98 314 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 TMCO4Q5TGY1 634 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 KIFC2Q96AC6 838 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 TUT1Q9H6E5 874 aaKnown RBP7.99□□□□□ -1.13
CCDC54-201ENST00000261058 TIMMDC1Q9NPL8 285 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 STIM2Q9P246 746 aa7.99□□□□□ -1.13
CCDC54-201ENST00000261058 MSX1P28360 303 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 C11orf91Q3C1V1 193 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 TREML4Q6UXN2 200 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 KLRG1Q96E93 195 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 NGLY1Q96IV0 654 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 CRISPLD1Q9H336 500 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 ANO2Q9NQ90 1003 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 BCS1LQ9Y276 419 aa7.98□□□□□ -1.13
CCDC54-201ENST00000261058 MAN1A2O60476 641 aa7.97□□□□□ -1.13
CCDC54-201ENST00000261058 TATP17735 454 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms