RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 HOXC4P09017 264 aaPredicted RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 PCSK2P16519 638 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 CCND1P24385 295 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 PIK3R1P27986 724 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 CSF2RBP32927 897 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 PGM1P36871 562 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 HSD17B2P37059 387 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 ACTR1BP42025 376 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 GDF5P43026 501 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 GPR3P46089 330 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 ACTR1AP61163 376 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 CTBSQ01459 385 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 KLRB1Q12918 225 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 CUL3Q13618 768 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 KRT33BQ14525 404 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 NAA25Q14CX7 972 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 GSTA3Q16772 222 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 IMPG1Q17R60 797 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 C18orf21Q32NC0 220 aaPredicted RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 PTCHD3Q3KNS1 767 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 CAPN13Q6MZZ7 669 aaPredicted RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 TMEM71Q6P5X7 295 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 AGTRAPQ6RW13 159 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 C16orf89Q6UX73 402 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 LARP4Q71RC2 724 aaKnown RBP eCLIP9.77□□□□□ -0.85
SS18-210ENST00000578700 TIPARPQ7Z3E1 657 aaKnown RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 ZNF438Q7Z4V0 828 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 C17orf82Q86X59 251 aaPredicted RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 TREML1Q86YW5 311 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 PARP9Q8IXQ6 854 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 NAGSQ8N159 534 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 MIER2Q8N344 545 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 KIF2BQ8N4N8 673 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 PHC3Q8NDX5 983 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 OR52B6Q8NGF0 335 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 NCSTNQ92542 709 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 MIB2Q96AX9 1013 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 RAD51AP1Q96B01 352 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 SLC7A6OSQ96CW6 309 aaPredicted RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 PPP3R2Q96LZ3 170 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 SLC38A3Q99624 504 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 TIMM29Q9BSF4 260 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 EFHD1Q9BUP0 239 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 MRPL1Q9BYD6 325 aaKnown RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 C1orf21Q9H246 121 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 ELOVL6Q9H5J4 265 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 AKTIPQ9H8T0 292 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 SLC40A1Q9NP59 571 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 KLHL3Q9UH77 587 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 POLG2Q9UHN1 485 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 PILRAQ9UKJ1 303 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 ASF1AQ9Y294 204 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 BTRCQ9Y297 605 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 TP53TG5Q9Y2B4 290 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 DYRK1BQ9Y463 629 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 TIMM22Q9Y584 194 aa9.77□□□□□ -0.85
SS18-210ENST00000578700 MRPS18BQ9Y676 258 aaKnown RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 COPG1Q9Y678 874 aaKnown RBP9.77□□□□□ -0.85
SS18-210ENST00000578700 B4E171 279 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 K7EM74 188 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 UGDHO60701 494 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 KRT16P08779 473 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 IDSP22304 550 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 PDHA2P29803 388 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 TSPAN7P41732 249 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 HALP42357 657 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 BDKRB1P46663 353 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CPA2P48052 419 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 SLC6A12P48065 614 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 PNLIPRP1P54315 467 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 FOXA1P55317 472 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 RAB15P59190 212 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 KCNJ2P63252 427 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 IRF8Q02556 426 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 ZNF33BQ06732 778 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 TRAF3Q13114 568 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 ART3Q13508 389 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 FASTKQ14296 549 aaKnown RBP9.76□□□□□ -0.85
SS18-210ENST00000578700 NFE2L1Q14494 772 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 NR1D2Q14995 579 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 NR6A1Q15406 480 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CLPPQ16740 277 aaPredicted RBP9.76□□□□□ -0.85
SS18-210ENST00000578700 MMEL1Q495T6 779 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 TMEM198Q66K66 360 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CEACAM20Q6UY09 585 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 MBOAT1Q6ZNC8 495 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 RINLQ6ZS11 566 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CHSY3Q70JA7 882 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CHST15Q7LFX5 561 aaPredicted RBP9.76□□□□□ -0.85
SS18-210ENST00000578700 THOC6Q86W42 341 aaKnown RBP9.76□□□□□ -0.85
SS18-210ENST00000578700 ZNF547Q8IVP9 402 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 DCUN1D3Q8IWE4 304 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 SYTL1Q8IYJ3 562 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 FAM9CQ8IZT9 166 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 OR9A1PQ8NGU1 263 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 STARD8Q92502 1023 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 REPS1Q96D71 796 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 CDK15Q96Q40 435 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 SLC25A23Q9BV35 468 aa9.76□□□□□ -0.85
SS18-210ENST00000578700 TBC1D10AQ9BXI6 508 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms