RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ALOX12P18054 663 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 MEF2AQ02078 507 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SMU1Q2TAY7 513 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 HENMT1Q5T8I9 393 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 TMEM220Q6QAJ8 160 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SFTPA1Q8IWL2 248 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 AADATQ8N5Z0 425 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 C1orf52Q8N6N3 182 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 TMEM159Q96B96 161 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 ZFYVE19Q96K21 471 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SGK2Q9HBY8 427 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 C8orf4Q9NR00 106 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 TMEM184CQ9NVA4 438 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 STOX2Q9P2F5 926 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 RAPGEFL1Q9UHV5 662 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 HELZP42694 1942 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 PCDHGA12O60330 932 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 MPC1LP0DKB6 136 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SYN1P17600 705 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 IRS1P35568 1242 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 WNT3P56703 355 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 GGTA1PQ4G0N0 100 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 IER5LQ5T953 404 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 ANKRD13BQ86YJ7 626 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 CHPFQ8IZ52 775 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SPPL2AQ8TCT8 520 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 NELL1Q92832 810 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 DNASE1L2Q92874 299 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 HSH2DQ96JZ2 352 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 CEP44Q9C0F1 390 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 SCN3BQ9NY72 215 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 VPS29Q9UBQ0 182 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 MAN2B2Q9Y2E5 1009 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 TRANK1O15050 2925 aa15.92■□□□□ 0.14
CCDC88B-210ENST00000494566 HTR3EA5X5Y0 456 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 EFCAB9A8MZ26 197 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ELFN1P0C7U0 828 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TUBA3CQ13748 450 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 SF3B4Q15427 424 aaKnown RBP eCLIP15.91■□□□□ 0.143e-6■■■■□ 24.5
CCDC88B-210ENST00000494566 KCNJ8Q15842 424 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 DGUOKQ16854 277 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 BRAT1Q6PJG6 821 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TCAIMQ8N3R3 496 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 CAPSLQ8WWF8 208 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 AP2M1Q96CW1 435 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 Q96MT0 163 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 PKP4Q99569 1192 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RAD18Q9NS91 495 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 MYO15AQ9UKN7 3530 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RGS10O43665 173 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TIMP1P01033 207 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 GADD45AP24522 165 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 GRK5P34947 590 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ST13P50502 369 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RPP38P78345 283 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ACSM2AQ08AH3 577 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TMEM115Q12893 351 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ZNF284Q2VY69 593 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ACSM2BQ68CK6 577 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 OR2T5Q6IEZ7 315 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 METTL2BQ6P1Q9 378 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TMPRSS11BQ86T26 416 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 MFSD4AQ8N468 514 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 CHCHD4Q8N4Q1 142 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 OR2T29Q8NH02 315 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 WDR20Q8TBZ3 569 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 PPP1R14BQ96C90 147 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 CHCHD6Q9BRQ6 235 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 DCSTAMPQ9H295 470 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RHCGQ9UBD6 479 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 IL36AQ9UHA7 158 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 PRKAB1Q9Y478 270 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 SMIM30A4D0T7 59 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TRIM64BA6NI03 449 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 EVPLLA8MZ36 301 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RETP07949 1114 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 CYP2A6P11509 494 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 IMPA1P29218 277 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RNF165Q6ZSG1 346 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 PARS2Q7L3T8 475 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 CACUL1Q86Y37 369 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 NEIL2Q969S2 332 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 TESCQ96BS2 214 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 C19orf43Q9BQ61 176 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 MROQ9BYG7 248 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 ACOT13Q9NPJ3 140 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 RLIMQ9NVW2 624 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 C14orf119Q9NWQ9 140 aa15.91■□□□□ 0.14
CCDC88B-210ENST00000494566 PCM1Q15154 2024 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SCN2BO60939 215 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SLCO2B1O94956 709 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 GSTM1P09488 218 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 ITIH1P19827 911 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 AP1S2P56377 157 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 ABHD18Q0P651 414 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 STARD3Q14849 445 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 DUOXA1Q1HG43 343 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 SVOPLQ8N434 492 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 PJA1Q8NG27 643 aa15.9■□□□□ 0.14
CCDC88B-210ENST00000494566 BTN2A2Q8WVV5 523 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms