RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SPIBQ01892 262 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 SMARCB1Q12824 385 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CAMK2BQ13554 666 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 KRR1Q13601 381 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CLPPQ16740 277 aaPredicted RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 PTCHD3Q3KNS1 767 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ERICH5Q6P6B1 374 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 GTPBP3Q969Y2 492 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 MYO19Q96H55 970 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 DEPDC7Q96QD5 511 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 MTERF1Q99551 399 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 COPS8Q99627 209 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CNPPD1Q9BV87 410 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 BEX2Q9BXY8 128 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 NDUFAF4Q9P032 175 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 PCDHGA2Q9Y5H1 932 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 PNMA8CA0A1B0GUJ8 204 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 J3KTA2 159 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 SELPP16109 830 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 ATP5C1P36542 298 aaKnown RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 C5orf22Q49AR2 442 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 CXorf57Q6NSI4 855 aaKnown RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 RNF165Q6ZSG1 346 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 SYNPOQ8N3V7 929 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 FBXO22Q8NEZ5 403 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 ST6GAL2Q96JF0 529 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 TMEM246Q9BRR3 403 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.56■■□□□ 1.042e-6■■■□□ 16.3
TRIM28-202ENST00000341753 COCHO43405 550 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 INHAP05111 366 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 BPIP17213 487 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 RPS3P23396 243 aaKnown RBP eCLIP21.56■■□□□ 1.042e-9■■■□□ 17
TRIM28-202ENST00000341753 HSPA14Q0VDF9 509 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 EXOC3L2Q2M3D2 409 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 SNAP47Q5SQN1 464 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 ZNF517Q6ZMY9 492 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 UBE2R2Q712K3 238 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 GALNT12Q8IXK2 581 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 GPR151Q8TDV0 419 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 MGLLQ99685 303 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 MMP28Q9H239 520 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 PAQR5Q9NXK6 330 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 MBD1Q9UIS9 605 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-202ENST00000341753 DNMT3LQ9UJW3 386 aa21.56■■□□□ 1.04
TRIM28-202ENST00000341753 NOTOA8MTQ0 251 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PCDH7O60245 1069 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 GPX5O75715 221 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 ZDHHC11BP0C7U3 371 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 MAPK1P28482 360 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 LIMK1P53667 647 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 DAB2P98082 770 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 MTAPQ13126 283 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 FAM214AQ32MH5 1076 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 TBRG1Q3YBR2 411 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 LGI4Q8N135 537 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 NAGSQ8N159 534 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PGBD3Q8N328 593 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 CHAC2Q8WUX2 184 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PDE4DIPQ5VU43 2346 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 CENPXA8MT69 81 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 ARHGAP33O14559 1287 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 FZD6O60353 706 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 GCM2O75603 506 aaPredicted RBP21.55■■□□□ 1.04
TRIM28-202ENST00000341753 HLA-EP13747 358 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PRPS1L1P21108 318 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 RFX2P48378 723 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 CCL23P55773 120 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 GAB1Q13480 694 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PIH1D2Q8WWB5 315 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 PIK3R3Q92569 461 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 ZFYVE19Q96K21 471 aa21.55■■□□□ 1.04
TRIM28-202ENST00000341753 GLYATL1P3A0A0U1RQE8 302 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 SLAMF1Q13291 335 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 GPR50Q13585 617 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 BAK1Q16611 211 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 FBXO43Q4G163 708 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 ARMC4Q5T2S8 1044 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 TSPAN33Q86UF1 283 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 SPATA17Q96L03 361 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 FAM8A1Q9UBU6 413 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 C2orf78A6NCI8 922 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 GABRB1P18505 474 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 SOX3P41225 446 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 STARD3Q14849 445 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 SSX1Q16384 188 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 FRG2Q64ET8 278 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 ADNP2Q6IQ32 1131 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 ANKS3Q6ZW76 656 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 TMCO2Q7Z6W1 182 aaPredicted RBP21.54■■□□□ 1.04
TRIM28-202ENST00000341753 WDR36Q8NI36 951 aaKnown RBP21.54■■□□□ 1.04
TRIM28-202ENST00000341753 FRG2BQ96QU4 278 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 HHIPQ96QV1 700 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 DOHHQ9BU89 302 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 SMURF1Q9HCE7 757 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 TIGARQ9NQ88 270 aa21.54■■□□□ 1.04
TRIM28-202ENST00000341753 CCR7P32248 378 aa21.53■■□□□ 1.04
TRIM28-202ENST00000341753 CSTF3Q12996 717 aaKnown RBP21.53■■□□□ 1.04
TRIM28-202ENST00000341753 PCDHB11Q9Y5F2 797 aa21.53■■□□□ 1.04
TRIM28-202ENST00000341753 A0A1B0GVM2 712 aa21.53■■□□□ 1.04
TRIM28-202ENST00000341753 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms