RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PTPRRQ15256 657 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DHCR24Q15392 516 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 MYLK3Q32MK0 819 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SLC51BQ86UW2 128 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 STK35Q8TDR2 534 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ADAMTS19Q8TE59 1207 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DENND1AQ8TEH3 1009 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PHF21BQ96EK2 531 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DMRTB1Q96MA1 342 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ZFP3Q96NJ6 502 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 POLR2J3Q9H1A7 115 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ABCG5Q9H222 651 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DNAJC18Q9H819 358 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 WASF3Q9UPY6 502 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SELENOFO60613 162 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ICMTO60725 284 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LYPLA2O95372 231 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CD247P20963 164 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TAS2R30P59541 319 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 RNF4P78317 190 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ITPK1Q13572 414 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ACTBL2Q562R1 376 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 KRBOX4Q5JUW0 171 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ZDHHC21Q8IVQ6 265 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SYNE4Q8N205 404 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 COLGALT1Q8NBJ5 622 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CMTM3Q96MX0 182 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PCDHB18PQ96TA0 734 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 KXD1Q9BQD3 176 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CADM1Q9BY67 442 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TNKS2Q9H2K2 1166 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 RPF2Q9H7B2 306 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LRTM1Q9HBL6 345 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 APMAPQ9HDC9 416 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 FAM217BQ9NTX9 383 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 OAZ3Q9UMX2 235 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 NOTCH4Q99466 2003 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 NEDD8-MDP1E9PL57 170 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ALX3O95076 343 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 FCER1AP12319 257 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ITPKAP23677 461 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 EPHX2P34913 555 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TGFB2P61812 414 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ORC1Q13415 861 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 IFI44LQ53G44 452 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TMEM205Q6UW68 189 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 HACD2Q6Y1H2 254 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SUN3Q8TAQ9 357 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 MAL2Q969L2 176 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SNX15Q9NRS6 342 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DDIT4Q9NX09 232 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DDX60Q8IY21 1712 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 GREB1Q4ZG55 1949 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PLXNA3P51805 1871 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 PATJQ8NI35 1801 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 DSCAMO60469 2012 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 A6NHS1 94 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 SEC14L6B5MCN3 397 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ARPC2O15144 300 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 RAD1O60671 282 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 RAMP2O60895 175 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 RGS11O94810 467 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 PROS1P07225 676 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 MYCLP1P12525 358 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 CDK8P49336 464 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF132P52740 706 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF143P52747 638 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 DNASE1L3Q13609 305 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 CAPSQ13938 189 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 FAM111BQ6SJ93 734 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 COMTD1Q86VU5 262 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 SUMF2Q8NBJ7 301 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ADPRHL1Q8NDY3 354 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 CHDHQ8NE62 594 aaPredicted RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ARVCFO00192 962 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 CD1EP15812 388 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 RBMXP38159 391 aaKnown RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 XKP51811 444 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 TKTL1P51854 596 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 MANFP55145 182 aaKnown RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ATP6AP1Q15904 470 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 SMTNL2Q2TAL5 461 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 METTL2BQ6P1Q9 378 aaKnown RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF550Q7Z398 422 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 COMMD1Q8N668 190 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 PLPP5Q8NEB5 264 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ZDHHC15Q96MV8 337 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 TMPRSS5Q9H3S3 457 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 LDAHQ9H6V9 325 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 COQ10BQ9H8M1 238 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 WDR6Q9NNW5 1121 aaKnown RBP4.71□□□□□ -1.65
CSMD3-201ENST00000297405 MIOSQ9NXC5 875 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 C10orf71Q711Q0 1435 aa4.71□□□□□ -1.65
CSMD3-201ENST00000297405 ERBB3P21860 1342 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF587BE7ETH6 402 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CLDN9O95484 217 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 PLEKP08567 350 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-201ENST00000297405 ADRB1P08588 477 aa4.71□□□□□ -1.66
CSMD3-201ENST00000297405 CASRP41180 1078 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms