RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 TUSC5Q8IXB3 177 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 TMCO5AQ8N6Q1 288 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 LRTM2Q8N967 370 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 AFAP1L1Q8TED9 768 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 APOBEC4Q8WW27 367 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 ARHGAP45Q92619 1136 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 SGF29Q96ES7 293 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 MAGED4Q96JG8 741 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 NECTIN4Q96NY8 510 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 LPAR4Q99677 370 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 NKX3-1Q99801 234 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 UTP14AQ9BVJ6 771 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 RAVER2Q9HCJ3 691 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 RAB9BQ9NP90 201 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 GMEB2Q9UKD1 530 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 WDR37Q9Y2I8 494 aa3.78□□□□□ -1.8
SMCHD1-213ENST00000609587 DISP3Q9P2K9 1392 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 KBTBD13C9JR72 458 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SOCS5O75159 536 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 KHDRBS3O75525 346 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 KRT33AO76009 404 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SEC24AO95486 1093 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 CEBPBP17676 345 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 CCND3P30281 292 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 NPBWR1P48145 328 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 NR0B1P51843 470 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 ITGA9Q13797 1035 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SLMAPQ14BN4 828 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 TYSND1Q2T9J0 566 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 TMEM30BQ3MIR4 351 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 CCDC158Q5M9N0 1113 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 OTUD3Q5T2D3 398 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 PWWP2BQ6NUJ5 590 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SLC25A47Q6Q0C1 308 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 LINC00696Q6ZRV3 163 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SLC24A5Q71RS6 500 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 BTN2A1Q7KYR7 527 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 PIWIL3Q7Z3Z3 882 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 IQCA1Q86XH1 822 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 MEX3DQ86XN8 651 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 FAM89BQ8N5H3 189 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 GBP7Q8N8V2 638 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 OR4C15Q8NGM1 316 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 OR10G8Q8NGN5 311 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 CTCFLQ8NI51 663 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 FIBINQ8TAL6 211 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 MRGPRDQ8TDS7 321 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 LITAFQ99732 161 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 PIGQQ9BRB3 760 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 FUCA2Q9BTY2 467 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 LSG1Q9H089 658 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 WDR13Q9H1Z4 485 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 TMEM206Q9H813 350 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 TUFT1Q9NNX1 390 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 MAN2C1Q9NTJ4 1040 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 ATAD3AQ9NVI7 634 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 SLC12A6Q9UHW9 1150 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 PRDM4Q9UKN5 801 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 MRPS28Q9Y2Q9 187 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 KLK4Q9Y5K2 254 aa3.77□□□□□ -1.81
SMCHD1-213ENST00000609587 TRAV18A0A075B6X5 111 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 A0A087WUV0 522 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 NPIPA3F8WFD2 350 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 ZNF195O14628 629 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 CTDSPLO15194 276 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 TEX28O15482 410 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 EDIL3O43854 480 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 VTNP04004 478 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 CD59P13987 128 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 DUTP33316 252 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 SGCGQ13326 291 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PTPN14Q15678 1187 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 BHLHB9Q6PI77 547 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PRSS55Q6UWB4 352 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 Q6ZSR9 355 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 FCRLAQ7L513 359 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 CPEB2Q7Z5Q1 589 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 GPR141Q7Z602 305 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PTAR1Q7Z6K3 402 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PRUNE1Q86TP1 453 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 HOGA1Q86XE5 327 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 SYCP3Q8IZU3 236 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PRSS35Q8N3Z0 413 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 OR7G3Q8NG95 312 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 UBLCP1Q8WVY7 318 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 AZIN2Q96A70 460 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 GMPPAQ96IJ6 420 aaPredicted RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 RBM41Q96IZ5 413 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 HNRNPABQ99729 332 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 RBM4Q9BWF3 364 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 BARHL1Q9BZE3 327 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 DNAI2Q9GZS0 605 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 NYXQ9GZU5 481 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 C2orf40Q9H1Z8 148 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 EGLN3Q9H6Z9 239 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 C10orf88Q9H8K7 445 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 SCRT2Q9NQ03 307 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 PDRG1Q9NUG6 133 aa3.76□□□□□ -1.81
SMCHD1-213ENST00000609587 ABCB8Q9NUT2 735 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms