RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 OR4A15Q8NGL6 344 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 UBTD2Q8WUN7 234 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 BAG5Q9UL15 447 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 SNX11Q9Y5W9 270 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ATG13O75143 517 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ERN1O75460 977 aaKnown RBP16.3■□□□□ 0.2
USP28-208ENST00000540438 EMP3P54852 163 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 MVKQ03426 396 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ZNF805Q5CZA5 627 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 C11orf74Q86VG3 221 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ADHFE1Q8IWW8 467 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 PSD4Q8NDX1 1056 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ARRDC3Q96B67 414 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 LGR4Q9BXB1 951 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 CPEB1Q9BZB8 566 aaKnown RBP16.3■□□□□ 0.2
USP28-208ENST00000540438 RLIMQ9NVW2 624 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ETAA1Q9NY74 926 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ZNF639Q9UID6 485 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ASF1AQ9Y294 204 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 ZNF510Q9Y2H8 683 aa16.3■□□□□ 0.2
USP28-208ENST00000540438 A0A0J9YVX5 310 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 WNT9AO14904 365 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 SCELO95171 688 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 KDELR2P33947 212 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 HBA1P69905 142 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 SPCS2Q15005 226 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 DUOXA1Q1HG43 343 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 ARMCX6Q7L4S7 300 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 MIPOL1Q8TD10 442 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CLP1Q92989 425 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 SLC29A3Q9BZD2 475 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CORINQ9Y5Q5 1042 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 PCM1Q15154 2024 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 TRPM6Q9BX84 2022 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 KPNA5O15131 536 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 SCN2BO60939 215 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 NPPAP01160 153 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CATP04040 527 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 CYP2A6P11509 494 aaPredicted RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 HLCSP50747 726 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CRYBA2P53672 197 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 ST8SIA6P61647 398 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 VMACQ2NL98 169 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 ARHGAP15Q53QZ3 475 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CPZQ66K79 652 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 BRAT1Q6PJG6 821 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 ZZZ3Q8IYH5 903 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 WDR20Q8TBZ3 569 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 OSGEPL1Q9H4B0 414 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CD320Q9NPF0 282 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 ATXN10Q9UBB4 475 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 SLC23A2Q9UGH3 650 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 PADI4Q9UM07 663 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 SCN3AQ9NY46 2000 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 POP7O75817 140 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 TAS2R50P59544 299 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 TUBA4AP68366 448 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 LRRC74AQ0VAA2 488 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 DCTN2Q13561 401 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 GALNT18Q6P9A2 607 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 CHPFQ8IZ52 775 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 L3MBTL4Q8NA19 623 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 RPL3LQ92901 407 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 MUC13Q9H3R2 512 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 XKR8Q9H6D3 395 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.29■□□□□ 0.2
USP28-208ENST00000540438 EXO1Q9UQ84 846 aaKnown RBP16.29■□□□□ 0.2
USP28-208ENST00000540438 OR1A2Q9Y585 309 aa16.29■□□□□ 0.2
USP28-208ENST00000540438 TBC1D3BA6NDS4 549 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 GLOD5A6NK44 160 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 FGBP02675 491 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PCCBP05166 539 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 CBSLP0DN79 551 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PSMB9P28065 219 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 CBSP35520 551 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 ZNF77Q15935 545 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 SPPL3Q8TCT6 385 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 SH3GL1Q99961 368 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 CCM2Q9BSQ5 444 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 KLHL20Q9Y2M5 609 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PLXND1Q9Y4D7 1925 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 SLC1A7O00341 560 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PRKRAO75569 313 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 ADH5P11766 374 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PRPS2P11908 318 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 ZNF8P17098 575 aaPredicted RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 HTR1BP28222 390 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 RRM2P31350 389 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 SOX9P48436 509 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 IDH2P48735 452 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 CLK3P49761 638 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 C2orf80Q0P641 193 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 AQP6Q13520 282 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 FXNQ16595 210 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 C11orf91Q3C1V1 193 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 PLEKHS1Q5SXH7 462 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 BROXQ5VW32 411 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 ADCK2Q7Z695 626 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 CALHM3Q86XJ0 350 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 ZNF547Q8IVP9 402 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms