RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZNF382Q96SR6 550 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 FAM83DQ9H4H8 585 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 CDCP1Q9H5V8 836 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GALNT9Q9HCQ5 603 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GLTPQ9NZD2 209 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 PIN4Q9Y237 131 aaKnown RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 CFL2Q9Y281 166 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 CCL27Q9Y4X3 112 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 HS3ST4Q9Y661 456 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 TRBV5-3A0A0A0MS03 114 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 NT5C1B-RDH14C9J2C7 533 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ATP6V1G2-DDX39BF2Z307 99 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 RFXAPO00287 272 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GLUD1P00367 558 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 RPS3P23396 243 aaKnown RBP eCLIP13.06□□□□□ -0.32
SKA3-201ENST00000298260 GTF2H2Q13888 395 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 POU4F3Q15319 338 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 GTF2H2CQ6P1K8 395 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ZNF605Q86T29 641 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 CALHM3Q86XJ0 350 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 RGL4Q8IZJ4 473 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 LINC01465Q8N7H1 131 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 ARRDC2Q8TBH0 407 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 C17orf62Q9BQA9 187 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 C1QTNF6Q9BXI9 259 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 SLC22A4Q9H015 551 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.06□□□□□ -0.32
SKA3-201ENST00000298260 FAM124BQ9H5Z6 455 aaPredicted RBP13.06□□□□□ -0.32
SKA3-201ENST00000298260 ASAH2Q9NR71 780 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 FKBP14Q9NWM8 211 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 NLKQ9UBE8 527 aa13.06□□□□□ -0.32
SKA3-201ENST00000298260 RPP40O75818 363 aaKnown RBP13.05□□□□□ -0.32
SKA3-201ENST00000298260 CYP17A1P05093 508 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 NAGAP17050 411 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 ERP29P30040 261 aaKnown RBP13.05□□□□□ -0.32
SKA3-201ENST00000298260 C5orf22Q49AR2 442 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PYDC2Q56P42 97 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.05□□□□□ -0.32
SKA3-201ENST00000298260 MARCH8Q5T0T0 291 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 MBOAT1Q6ZNC8 495 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 FAM124AQ86V42 546 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 VWA5B2Q8N398 1253 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 TMEM40Q8WWA1 233 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 COL21A1Q96P44 957 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PAAF1Q9BRP4 392 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 APOL5Q9BWW9 433 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 GABARAPL1Q9H0R8 117 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 ERVW-1Q9UQF0 538 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PDCD11Q14690 1871 aaKnown RBP13.05□□□□□ -0.32
SKA3-201ENST00000298260 A0A0C4DFX4 3053 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 USP34Q70CQ2 3546 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 NINQ8N4C6 2090 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 FAM220BPB1ANY3 271 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PLD2O14939 933 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PDGFAP04085 211 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 BCKDHAP12694 445 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 BRCC3P46736 316 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 CYP4F8P98187 520 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 SCN1BQ07699 218 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 OR4F3Q6IEY1 312 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PAQR6Q6TCH4 344 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 BCDIN3DQ7Z5W3 292 aaKnown RBP13.05□□□□□ -0.32
SKA3-201ENST00000298260 ZSWIM9Q86XI8 627 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 C7orf57Q8NEG2 295 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 FLCNQ8NFG4 579 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 OR9Q2Q8NGE9 314 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 OR10T2Q8NGX3 314 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 CDC26Q8NHZ8 85 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 ENKURQ8TC29 256 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 DIRAS2Q96HU8 199 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 PITX2Q99697 317 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 TTLL2Q9BWV7 592 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 SPATC1LQ9H0A9 340 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 AS3MTQ9HBK9 375 aa13.05□□□□□ -0.32
SKA3-201ENST00000298260 STX16O14662 325 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 GPR182O15218 404 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 SHOXO15266 292 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 ACPPP15309 386 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 M6PRP20645 277 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 APEX1P27695 318 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 OVOS1Q6IE37 1185 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 EFHBQ8N7U6 833 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 GTPBP3Q969Y2 492 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 IL4I1Q96RQ9 567 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 CATSPERBQ9H7T0 1116 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 PPT2Q9UMR5 302 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 EPN2O95208 641 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 ESR1P03372 595 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 NAT2P11245 290 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 DDCP20711 480 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 POU1F1P28069 291 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 FEN1P39748 380 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 MAN2A2P49641 1150 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 RENBPP51606 427 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 AP2S1P53680 142 aaPredicted RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 MGAT3Q09327 533 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 ZMYND11Q15326 602 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 SF1Q15637 639 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 CCDC85BQ15834 202 aaPredicted RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 CPSF6Q16630 551 aaKnown RBP eCLIP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms