RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GPR143P51810 404 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 NUDT6P53370 316 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TAS2R20P59543 309 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CDK3Q00526 305 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CACNB2Q08289 660 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 KLF10Q13118 480 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 BAMBIQ13145 260 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 DPYSL3Q14195 570 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TSTD2Q5T7W7 516 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 GLYATQ6IB77 296 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CHSY3Q70JA7 882 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SDR42E1Q8WUS8 393 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CPT1BQ92523 772 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 MOCOSQ96EN8 888 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CDADC1Q9BWV3 514 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 FNIP2Q9P278 1114 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 NWD1Q149M9 1564 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 C2orf78A6NCI8 922 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ANGPTL7O43827 346 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TLR5O60602 858 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SDC3O75056 442 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PEX11AO75192 247 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CSF1P09603 554 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 METTL15P1P0C7V9 234 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 HOXB9P17482 250 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CYP2F1P24903 491 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 Q3ZCU0 254 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SBK1Q52WX2 424 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RALGPS1Q5JS13 557 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TDRD10Q5VZ19 366 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SYNPOQ8N3V7 929 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF561Q8N587 486 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 AUTS2Q8WXX7 1259 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 MR1Q95460 341 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TMEM68Q96MH6 324 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TIMM29Q9BSF4 260 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZBTB26Q9HCK0 441 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 GMPR2Q9P2T1 348 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PCDHA6Q9UN73 950 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PRELID3BQ9Y3B1 194 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PCDHA8Q9Y5H6 950 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TLR4O00206 839 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 MICAL2O94851 1124 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RCBTB2O95199 551 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CPB1P15086 417 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 KDELR1P24390 212 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RBMS1P29558 406 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RPL23AP62750 156 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ERVK-8P63133 956 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TLE4Q04727 773 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF177Q13360 481 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RAB11BQ15907 218 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SPIN4Q56A73 249 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 EXOSC6Q5RKV6 272 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZFPM1Q8IX07 1006 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 FAM160A2Q8N612 972 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 AVL9Q8NBF6 648 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 OR4Q3Q8NH05 313 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 KCNJ9Q92806 393 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PEX13Q92968 403 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 GNG13Q9P2W3 67 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PLA2G4CQ9UP65 541 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 A0A1B0GUL6 1792 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 A0A1W2PP18 115 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LRRC72A6NJI9 287 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CNTN5O94779 1100 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LCKP06239 509 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SLC6A6P31641 620 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ERFP50548 548 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ATP4BP51164 291 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 NPTX1Q15818 432 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 FAM71AQ8IYT1 594 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF565Q8N9K5 539 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CCDC71LQ8N9Z2 235 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TSEN15Q8WW01 171 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 TMEM121BQ9BXQ6 578 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CHRDQ9H2X0 955 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SPON1Q9HCB6 807 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 SDHAF2Q9NX18 166 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ZDHHC7Q9NXF8 308 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 VAPAQ9P0L0 249 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LRFN1Q9P244 771 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PTPRFP10586 1907 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 DLEC1Q9Y238 1755 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 HHLA1C9JL84 531 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PHYHO14832 338 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 FLRT2O43155 660 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 PGLSO95336 258 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LAMP2P13473 410 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 RAB6AP20340 208 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 OSTNP61366 133 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CYP1B1Q16678 543 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 CLPPQ16740 277 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 IGFN1Q86VF2 1251 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 LRRC28Q86X40 367 aaPredicted RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 MINDY3Q9H8M7 445 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 RIMS1Q86UR5 1692 aaKnown RBP4.72□□□□□ -1.65
CSMD3-201ENST00000297405 ISM1B1AKI9 464 aa4.72□□□□□ -1.65
CSMD3-201ENST00000297405 HOXA2O43364 376 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms