RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EIPR1Q53HC9 387 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ATXN7L2Q5T6C5 722 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-202ENST00000394243 INTS5Q6P9B9 1019 aaKnown RBP11.55□□□□□ -0.56
SYNPO-202ENST00000394243 VSIG10LQ86VR7 867 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 HSH2DQ96JZ2 352 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 HYLS1Q96M11 299 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 BIN3Q9NQY0 253 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF226Q9NYT6 803 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 NFS1Q9Y697 457 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 RASAL1O95294 804 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CYB5AP00167 134 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 PRPS1L1P21108 318 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 OAZ1P54368 228 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 BATFQ16520 125 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 FAM46CQ5VWP2 391 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 RHBDF1Q96CC6 855 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 MYOCQ99972 504 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 GNG8Q9UK08 70 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 PRORSD1PA6NEY8 169 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 PCDH7O60245 1069 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 FAM189A1O60320 539 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 BPNT1O95861 308 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 GSTM3P21266 225 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 MAGEA6P43360 314 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 DSTNP60981 165 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 KCNAB2Q13303 367 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 MON1AQ86VX9 555 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 FAM129CQ86XR2 697 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 TMEM151AQ8N4L1 468 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 BTN2A3PQ96KV6 586 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CCDC106Q9BWC9 280 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 MTG2Q9H4K7 406 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 EVLQ9UI08 416 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-202ENST00000394243 PCDHGA11Q9Y5H2 935 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ARL5AQ9Y689 179 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 SLC7A4O43246 635 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 DLX3O60479 287 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 RAB3BP20337 219 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ZDHHC20Q5W0Z9 365 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 MBLAC2Q68D91 279 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF367Q7RTV3 350 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 TREML1Q86YW5 311 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 TCEANCQ8N8B7 351 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 COX18Q8N8Q8 333 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ANKFN1Q8N957 763 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 NFKBIDQ8NI38 313 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ALPK1Q96QP1 1244 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-202ENST00000394243 DTLQ9NZJ0 730 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 CDC14AQ9UNH5 594 aa11.55□□□□□ -0.56
SYNPO-202ENST00000394243 ARL5CA6NH57 179 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FAM159BA6NKW6 160 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 KIAA0513O60268 411 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PPP5CP53041 499 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 MFSD2AQ8NA29 543 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 TCEAL3Q969E4 200 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 CPNE2Q96FN4 548 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 HMCESQ96FZ2 354 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FUNDC2Q9BWH2 189 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PARPBPQ9NWS1 579 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FKBPLQ9UIM3 349 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PCDHGC4Q9Y5F7 938 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 KRBA1A5PL33 1030 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SSX4O60224 188 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 CDK14O94921 469 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 GGT5P36269 586 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SMAD3P84022 425 aaKnown RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 NFATC3Q12968 1075 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FGFBP1Q14512 234 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 ODF4Q2M2E3 257 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 TOP6BLQ8N6T0 577 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PSD4Q8NDX1 1056 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PROKR2Q8NFJ6 384 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SHKBP1Q8TBC3 707 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SGCDQ92629 289 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 COPS5Q92905 334 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 GON4LQ3T8J9 2241 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 OR6C74A6NCV1 312 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 DENRO43583 198 aaKnown RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FAPQ12884 760 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 FAM182AQ5T1J6 154 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 ATAD3CQ5T2N8 411 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 LINGO4Q6UY18 593 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SLCO2A1Q92959 643 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 UROC1Q96N76 676 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 LUMP51884 338 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 CREMQ03060 361 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PCLAFQ15004 111 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SLC22A15Q8IZD6 547 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 LNX2Q8N448 690 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PRRG4Q9BZD6 226 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 PTPRUQ92729 1446 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 CEP170BQ9Y4F5 1589 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 CACNB4O00305 520 aaPredicted RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 NUPL2O15504 423 aaKnown RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 RNASEH2AO75792 299 aaKnown RBP11.54□□□□□ -0.56
SYNPO-202ENST00000394243 C8GP07360 202 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 BMXP51813 675 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SLC8B1Q6J4K2 584 aa11.54□□□□□ -0.56
SYNPO-202ENST00000394243 SLC16A9Q7RTY1 509 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms