RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 PPHLN1Q8NEY8 458 aaKnown RBP7.29□□□□□ -1.24
NEK3-201ENST00000550331 CFAP61Q8NHU2 1237 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 GSDMBQ8TAX9 411 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 LKAAEAR1Q8TD35 194 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 ATG4AQ8WYN0 398 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 ZNF778Q96MU6 729 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 AGAP4Q96P64 663 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 PANX3Q96QZ0 392 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 BAG1Q99933 345 aaPredicted RBP7.29□□□□□ -1.24
NEK3-201ENST00000550331 UNKQ9C0B0 810 aaKnown RBP7.29□□□□□ -1.24
NEK3-201ENST00000550331 LHPPQ9H008 270 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 P2RY12Q9H244 342 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 RAB6BQ9NRW1 208 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 SEMA3GQ9NS98 782 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 CATSPERZQ9NTU4 200 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 PAK5Q9P286 719 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 SLC39A10Q9ULF5 831 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 NOVA2Q9UNW9 492 aaKnown RBP7.29□□□□□ -1.24
NEK3-201ENST00000550331 NTNG1Q9Y2I2 539 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 KLHL20Q9Y2M5 609 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 FAM169AQ9Y6X4 670 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 CCDC168Q8NDH2 2452 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 PIKFYVEQ9Y2I7 2098 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 HIVEP1P15822 2718 aa7.29□□□□□ -1.24
NEK3-201ENST00000550331 PDZD2O15018 2839 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 SVILO95425 2214 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 HYKKA2RU49 373 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 AP3B1O00203 1094 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 E2F3O00716 465 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 CD3EAPO15446 510 aaKnown RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 C1orf105O95561 183 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 IFNB1P01574 187 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 APRTP07741 180 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 EDN3P14138 238 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 RPS3P23396 243 aaKnown RBP eCLIP7.28□□□□□ -1.24
NEK3-201ENST00000550331 MCM3P25205 808 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 CCNFP41002 786 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 GRIA3P42263 894 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 CARSP49589 748 aaKnown RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 PER3P56645 1201 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 ZNF169Q14929 603 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 NAA25Q14CX7 972 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 TLR1Q15399 786 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 RBBP7Q16576 425 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 HIF1AQ16665 826 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 PCID2Q5JVF3 399 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 SEL1L2Q5TEA6 688 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 PTRHD1Q6GMV3 140 aaKnown RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 RNF44Q7L0R7 432 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 OTOAQ7RTW8 1153 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 TAX1BP1Q86VP1 789 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 KCNMB4Q86W47 210 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 TMEM139Q8IV31 216 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 MCEMP1Q8IX19 187 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 KRT222Q8N1A0 295 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 C2orf73Q8N5S3 287 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 CCDC89Q8N998 374 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 OR2L3Q8NG85 312 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 OR11G2Q8NGC1 345 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 OR2A1Q8NGT9 310 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 MAGEC3Q8TD91 643 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 GRHL3Q8TE85 626 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 IL17FQ96PD4 163 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 EPS8L2Q9H6S3 715 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 EIF2B3Q9NR50 452 aaKnown RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 CHRAC1Q9NRG0 131 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 TREX1Q9NSU2 369 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 SPATA7Q9P0W8 599 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 MARCH4Q9P2E8 410 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 CTSFQ9UBX1 484 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 ZNF282Q9UDV7 671 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 CIDEBQ9UHD4 219 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 GNPTGQ9UJJ9 305 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 TTC7AQ9ULT0 858 aaPredicted RBP7.28□□□□□ -1.24
NEK3-201ENST00000550331 ZNF148Q9UQR1 794 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 ENTPD4Q9Y227 616 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 CSAG2Q9Y5P2 127 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 CAPN6Q9Y6Q1 641 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 MTORP42345 2549 aa7.28□□□□□ -1.24
NEK3-201ENST00000550331 IGLV3-12A0A075B6K2 115 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 A0A1W2PQ72 361 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 MAP2K7O14733 419 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 PCDH17O14917 1159 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 PRPF4O43172 522 aaKnown RBP eCLIP7.27□□□□□ -1.25
NEK3-201ENST00000550331 CTSVO60911 334 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 PHF2O75151 1096 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 ALOX12BO75342 701 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 HPP00738 406 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 ACPPP15309 386 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 FDXRP22570 491 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 ATP5DP30049 168 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 OR1D4P47884 311 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 OCA2Q04671 838 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 CDC16Q13042 620 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 MFAP5Q13361 173 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 INAQ16352 499 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 MUM1Q2TAK8 710 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 WASHC2DQ5SRD0 308 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 RNF187Q5TA31 235 aaPredicted RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms