RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 PELI2Q9HAT8 420 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 GRPEL1Q9HAV7 217 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 ZBTB20Q9HC78 741 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 TBC1D7Q9P0N9 293 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 MTUS1Q9ULD2 1270 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 COL5A2P05997 1499 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 ANKARQ7Z5J8 1434 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 A0A1W2PRB8 838 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 FAM170AA1A519 330 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 H0Y626 953 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 C16orf97H3BN30 126 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CCER2I3L3R5 266 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 GAPDHSO14556 408 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CAPN9O14815 690 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CSN3P07498 182 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 INHBAP08476 426 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 SMIM18P0DKX4 95 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 SAGP10523 405 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 PDGFRAP16234 1089 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 DPEP1P16444 411 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 NR1D1P20393 614 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 TKTP29401 623 aaKnown RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 NR2C2P49116 596 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 BMXP51813 675 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 POU3F1Q03052 451 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 MZT1Q08AG7 82 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 ITGA7Q13683 1181 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 MPP7Q5T2T1 576 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 WBP2NLQ6ICG8 309 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 C11orf57Q6ZUT1 292 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 SPATA19Q7Z5L4 167 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 PLD3Q8IV08 490 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 RFLNBQ8N5W9 214 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 C9orf106Q8NAJ2 232 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 ZNF473Q8WTR7 871 aaKnown RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CCDC107Q8WV48 283 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 IRGQQ8WZA9 623 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 ERO1AQ96HE7 468 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 THUMPD3Q9BV44 507 aaKnown RBP4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CDH20Q9HBT6 801 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 CRYBG1Q9Y4K1 1723 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 ANKRD50Q9ULJ7 1429 aa4.55□□□□□ -1.68
LIMA1-205ENST00000550592 E9PCH4 1651 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 NHSQ6T4R5 1651 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TUBGCP6Q96RT7 1819 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TRAV34A0A0B4J273 112 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 ARHGEF37A1IGU5 675 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 HTR3EA5X5Y0 456 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 OR6C76A6NM76 312 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PI4K2BG5E9Z4 385 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PSMD14O00487 310 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 AP5Z1O43299 807 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PRKNO60260 465 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 GBAP04062 536 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 FGF5P12034 268 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 MSH3P20585 1137 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 SP100P23497 879 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 AZGP1P25311 298 aaKnown RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TLX1P31314 330 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PTGER4P35408 488 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 KRT2P35908 639 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 MAP2K2P36507 400 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 CUL3Q13618 768 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TUBB2AQ13885 445 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 CA9Q16790 459 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 CCNYL2Q5T2Q4 361 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 C11orf63Q6NUN7 778 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 NFE4Q86UQ8 179 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 MAB21L3Q8N8X9 362 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 THAP8Q8NA92 274 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 KBTBD3Q8NAB2 608 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 OR2T12Q8NG77 320 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 OR13A1Q8NGR1 328 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 OCC1Q8TAD7 63 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 C9orf43Q8TAL5 461 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 MYADMQ96S97 322 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 RTP3Q9BQQ7 232 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 KATNB1Q9BVA0 655 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TUBB2BQ9BVA1 445 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 ALDH8A1Q9H2A2 487 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-205ENST00000550592 RETREG1Q9H6L5 497 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PTTG2Q9NZH5 202 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 POLLQ9UGP5 575 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 SNX7Q9UNH6 387 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 PKD1L3Q7Z443 1732 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 DAPK1P53355 1430 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 TRPM1Q7Z4N2 1603 aa4.54□□□□□ -1.68
LIMA1-205ENST00000550592 BTAF1O14981 1849 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 COL18A1P39060 1754 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 ACSL3O95573 720 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 ZFYP08048 801 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-205ENST00000550592 PLA2G4BP0C869 781 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 CETPP11597 493 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 TCF4P15884 667 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 ADRA2CP18825 462 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 DVL1P1P54792 670 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-205ENST00000550592 UBASH3AP57075 661 aa4.53□□□□□ -1.68
LIMA1-205ENST00000550592 DMP1Q13316 513 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-205ENST00000550592 ACCSLQ4AC99 568 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms