RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 SPP1P10451 314 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 CASTP20810 708 aaKnown RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 CDH3P22223 829 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 PSMA3P25788 255 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 HOXA1P49639 335 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 GAS1P54826 345 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 FOLH1Q04609 750 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 DMP1Q13316 513 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 RCN2Q14257 317 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 HERC3Q15034 1050 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 MEP1BQ16820 701 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ANKRD20A4Q4UJ75 823 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ANKRD20A8PQ5CZ79 823 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 WDR38Q5JTN6 314 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ANKRD20A2Q5SQ80 823 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ANKRD20A1Q5TYW2 823 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ANKRD20A3Q5VUR7 823 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 TXNRD3NBQ6F5E7 133 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 PODNL1Q6PEZ8 512 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 PRSS55Q6UWB4 352 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 TUSC5Q8IXB3 177 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 CARNMT1Q8N4J0 409 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 RASGEF1AQ8N9B8 481 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ATAD1Q8NBU5 361 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 PPFIBP2Q8ND30 876 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 CTCFLQ8NI51 663 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 C9orf43Q8TAL5 461 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 GRK7Q8WTQ7 553 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 DNASE1L2Q92874 299 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 PYCR2Q96C36 320 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 SENP5Q96HI0 755 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 NSL1Q96IY1 281 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 MEIS3Q99687 375 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 TRMT61BQ9BVS5 477 aaKnown RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 CACNG6Q9BXT2 260 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 FUT8Q9BYC5 575 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 SHARPINQ9H0F6 387 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ZBTB20Q9HC78 741 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 FAM207AQ9NSI2 230 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ARGLU1Q9NWB6 273 aaPredicted RBP3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 ZDHHC2Q9UIJ5 367 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 TNNQ9UQP3 1299 aa3.57□□□□□ -1.84
HMGB1P17-201ENST00000403495 DOCK7Q96N67 2140 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 IGLV9-49A0A0B4J1Y8 123 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 A0A1B0GUV1 79 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 DENND3A2RUS2 1198 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 ARPC2O15144 300 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 PRKNO60260 465 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 RNASEH1O60930 286 aaKnown RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 BAG3O95817 575 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 FRMD6-AS1P0C7T7 363 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TIA1P31483 386 aaKnown RBP eCLIP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 KRT2P35908 639 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TCF7P36402 384 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 HSD17B3P37058 310 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 DCTP40126 519 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 RPL21P46778 160 aaKnown RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 LBX1P52954 281 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 MFAP3P55082 362 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 ADARP55265 1226 aaKnown RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 CLDN15P56746 228 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 LINC01547P58512 204 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TYSND1Q2T9J0 566 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 ZNF718Q3SXZ3 478 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TECRLQ5HYJ1 363 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 FAM166AQ6J272 317 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 IYDQ6PHW0 289 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 MSANTD1Q6ZTZ1 278 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 IL17RELQ6ZVW7 336 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 SMIM29Q86T20 159 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 NFE4Q86UQ8 179 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 CROCCP3Q8IVE0 287 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TIGD4Q8IY51 512 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 NAT8LQ8N9F0 302 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 PHLDA1Q8WV24 401 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 PTP4A1Q93096 173 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 TMEM143Q96AN5 459 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 ERO1AQ96HE7 468 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 HNRNPABQ99729 332 aaKnown RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 MLPHQ9BV36 600 aaPredicted RBP3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 DNAI2Q9GZS0 605 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 MIS12Q9H081 205 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 GSN-AS1Q9NRJ2 163 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 P4HTMQ9NXG6 502 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 CNIH4Q9P003 139 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 GMEB2Q9UKD1 530 aa3.56□□□□□ -1.84
HMGB1P17-201ENST00000403495 GREB1LQ9C091 1923 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 A0A0A6YYC8 382 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 YDJCA8MPS7 323 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 I3L1I5 382 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 ACOT8O14734 319 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 IFIT3O14879 490 aaKnown RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 SNX3O60493 162 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 PIGNO95427 931 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 FGF5P12034 268 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 CCND3P30281 292 aaPredicted RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 CCKARP32238 428 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 VAMP7P51809 220 aa3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 ILF2Q12905 390 aaKnown RBP3.55□□□□□ -1.84
HMGB1P17-201ENST00000403495 GAGE5Q13069 117 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms