RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 HIST1H2AGP0C0S8 130 aaPredicted RBP17.7■□□□□ 0.42
SDF4-201ENST00000263741 CCL4P13236 92 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 HIST1H2ADP20671 130 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 TBPL1P62380 186 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 SH3BP2P78314 561 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 LGSNQ5TDP6 509 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 ISCA2Q86U28 154 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 FAM129CQ86XR2 697 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 PYCR2Q96C36 320 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 HIST1H2AHQ96KK5 128 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 MIPEPQ99797 713 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 HIST1H2AJQ99878 128 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 DPYSL5Q9BPU6 564 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 H2AFJQ9BTM1 129 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 STRADBQ9C0K7 418 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 OCIAD1Q9NX40 245 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 OARD1Q9Y530 152 aa17.7■□□□□ 0.42
SDF4-201ENST00000263741 PABPN1LA6NDY0 278 aaKnown RBP17.69■□□□□ 0.42
SDF4-201ENST00000263741 E7ENX8 843 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 FAM107AO95990 144 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 KRT15P19012 456 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 ETV5P41161 510 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 ATP6V0D1P61421 351 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 TAP2Q03519 686 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 AGTRAPQ6RW13 159 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 RAB11FIP2Q7L804 512 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 PRSS42Q7Z5A4 293 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 YTHDF3Q7Z739 585 aaKnown RBP17.69■□□□□ 0.42
SDF4-201ENST00000263741 TDRPQ86YL5 185 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 LRRC56Q8IYG6 542 aaPredicted RBP17.69■□□□□ 0.42
SDF4-201ENST00000263741 PMEPA1Q969W9 287 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 KIAA1191Q96A73 305 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 MTBPQ96DY7 904 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 CCDC138Q96M89 665 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 GPR78Q96P69 363 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 EGFL8Q99944 293 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 TWSG1Q9GZX9 223 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 CNOT10Q9H9A5 744 aaKnown RBP17.69■□□□□ 0.42
SDF4-201ENST00000263741 TAC3Q9UHF0 121 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 RNF112Q9ULX5 631 aa17.69■□□□□ 0.42
SDF4-201ENST00000263741 MATN2O00339 956 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 PRICKLE3O43900 615 aaPredicted RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 CDH16O75309 829 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 KLHL2O95198 593 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 ENO2P09104 434 aaPredicted RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 PYGBP11216 843 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 PPP2R2AP63151 447 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 CAMK2BQ13554 666 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 COL9A2Q14055 689 aaPredicted RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 KIR2DS3Q14952 304 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 TGFBIQ15582 683 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 SF1Q15637 639 aaKnown RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 CROCCP2Q86T23 111 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 HMGCLL1Q8TB92 370 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 LIN37Q96GY3 246 aaPredicted RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 TRIM54Q9BYV2 358 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 ZNF768Q9H5H4 540 aaKnown RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 NMRAL1Q9HBL8 299 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 SOHLH2Q9NX45 425 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 PISDQ9UG56 409 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 SH2B3Q9UQQ2 575 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 CCDC187A0A096LP49 1063 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 UBXN8O00124 270 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 MAGP20916 626 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 CSTF2P33240 577 aaKnown RBP eCLIP17.68■□□□□ 0.42
SDF4-201ENST00000263741 AP1S2P56377 157 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 GABREP78334 506 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 NAE1Q13564 534 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 FAM83EQ2M2I3 478 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 KRT71Q3SY84 523 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 KIAA1614Q5VZ46 1190 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 ERMP1Q7Z2K6 904 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 CLEC14AQ86T13 490 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 GPSM1Q86YR5 675 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 OR2A1Q8NGT9 310 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 SMPDL3AQ92484 453 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 ESAMQ96AP7 390 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 CD180Q99467 661 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 PITPNM3Q9BZ71 974 aa17.68■□□□□ 0.42
SDF4-201ENST00000263741 NOVA2Q9UNW9 492 aaKnown RBP17.68■□□□□ 0.42
SDF4-201ENST00000263741 EFCAB7A8K855 629 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 SUPT3HB4E1H0 165 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 SUPT3HO75486 399 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 ANKRD34CP0C6C1 535 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 EBLN1P0CF75 366 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 RPA3P35244 121 aaPredicted RBP17.67■□□□□ 0.42
SDF4-201ENST00000263741 TRA2AQ13595 282 aaKnown RBP eCLIP17.67■□□□□ 0.42
SDF4-201ENST00000263741 ARHGAP19Q14CB8 494 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 ZIC1Q15915 447 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 THEMIS2Q5TEJ8 643 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 TIFABQ6ZNK6 161 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 PACS2Q86VP3 889 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 CCT8L2Q96SF2 557 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 ATOH8Q96SQ7 321 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 CCDC177Q9NQR7 707 aaPredicted RBP17.67■□□□□ 0.42
SDF4-201ENST00000263741 NEUROG3Q9Y4Z2 214 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 SDK2Q58EX2 2172 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 A0A0J9YY10 115 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 TK2O00142 265 aa17.67■□□□□ 0.42
SDF4-201ENST00000263741 MT-ND3P03897 115 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms