RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 EXO5Q9H790 373 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 EXD2Q9NVH0 621 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 C1orf109Q9NX04 203 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CAB39Q9Y376 341 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 MTCH2Q9Y6C9 303 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 H3BNH8 94 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CER1O95813 267 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 IGLV3-27P01718 113 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 PTPN4P29074 926 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 P2RY2P41231 377 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CSTF3Q12996 717 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 LRP8Q14114 963 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SLC9A5Q14940 896 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 FAM214AQ32MH5 1076 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 USP30Q70CQ3 517 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 LIMS2Q7Z4I7 341 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 NUDT13Q86X67 352 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 DDHD1Q8NEL9 900 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZNF555Q8NEP9 628 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ARRDC3Q96B67 414 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZNF707Q96C28 371 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZNF778Q96MU6 729 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 UHRF1Q96T88 793 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 KLHL25Q9H0H3 589 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 XKR8Q9H6D3 395 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ABI3Q9P2A4 366 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 PLAGL1Q9UM63 463 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 PCDHGB3Q9Y5G1 929 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 PSAT1Q9Y617 370 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 LOC285095A0A1B0GVY8 99 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 A8MT66 165 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SNX3O60493 162 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZNF37AP17032 561 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 HRH2P25021 359 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 GUCA1AP43080 201 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 VAC14Q08AM6 782 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 RPA4Q13156 261 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SLC13A2Q13183 592 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZNF549Q6P9A3 640 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CYS1Q717R9 158 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 WFDC5Q8TCV5 224 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZDHHC1Q8WTX9 485 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 WBP2Q969T9 261 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 C7orf26Q96N11 449 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 WDR55Q9H6Y2 383 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 SBF1O95248 1867 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 FOXO6A8MYZ6 492 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 GPR89AB7ZAQ6 455 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SIX3O95343 332 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 IGLV3-25P01717 112 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 GPR89BP0CG08 455 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 MAOBP27338 520 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TAS2R50P59544 299 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TUBA4AP68366 448 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 NFKB2Q00653 900 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 MED21Q13503 144 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 CCINQ13939 588 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TGFBIQ15582 683 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 GPAT3Q53EU6 434 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 PNCKQ6P2M8 343 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SYCE2Q6PIF2 218 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TMIGD1Q6UXZ0 262 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TIFABQ6ZNK6 161 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ZDHHC14Q8IZN3 488 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 GPR26Q8NDV2 337 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ADAMTS15Q8TE58 950 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 RGMAQ96B86 450 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 CMTM7Q96FZ5 175 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 LRCH3Q96II8 777 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 FOXQ1Q9C009 403 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ARNT2Q9HBZ2 717 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 HPS4Q9NQG7 708 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SAR1AQ9NR31 198 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ANGPT4Q9Y264 503 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 PCDHGA2Q9Y5H1 932 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 EIF4E1BA6NMX2 242 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 HNRNPRO43390 633 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 ERI3O43414 337 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 SERPINB1P30740 379 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 CCT8P50990 548 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 YPEL5P62699 121 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 HHEXQ03014 270 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 IRF4Q15306 451 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TAZQ16635 292 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TMEM259Q4ZIN3 620 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 MLIPQ5VWP3 458 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 FRG2Q64ET8 278 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 PLXDC1Q8IUK5 500 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 KIAA1143Q96AT1 154 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 FRG2BQ96QU4 278 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 HDAC8Q9BY41 377 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 IRF2BPLQ9H1B7 796 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 IL21RQ9HBE5 538 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ZNF446Q9NWS9 450 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 CDH22Q9UJ99 828 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 HCN4Q9Y3Q4 1203 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 OR6C74A6NCV1 312 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 POU2F2P09086 479 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TIGD2Q4W5G0 525 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 USP53Q70EK8 1073 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms