RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CTNNAL1Q9UBT7 734 aa6.78□□□□□ -1.32
LIMA1-202ENST00000394943 APOBEC2Q9Y235 224 aaKnown RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 ARID1BQ8NFD5 2236 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-202ENST00000394943 A0A0J9YY10 115 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 A0A1W2PNU3 283 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 FFAR2O15552 330 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 DUX1O43812 170 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ZBTB14O43829 449 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CPNE6O95741 557 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PROS1P07225 676 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 NPPBP16860 134 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 C1orf61Q13536 156 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC6Q16204 474 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 UBE2R2Q712K3 238 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PLXDC1Q8IUK5 500 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 GALNT15Q8N3T1 639 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 NXNL1Q96CM4 212 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TRAPPC9Q96Q05 1148 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC134Q9H6E4 229 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CNOT10Q9H9A5 744 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CAB39LQ9H9S4 337 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM184CQ9NVA4 438 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 SLC39A10Q9ULF5 831 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PCDHB11Q9Y5F2 797 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TNPO3Q9Y5L0 923 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CDC7O00311 574 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 DYNC1I1O14576 645 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 H2AFYO75367 372 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 SCELO95171 688 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CCDC166P0CW27 439 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 EZRP15311 586 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 LSSP48449 732 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PRDX1Q06830 199 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PLA2G4EQ3MJ16 856 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CCSMST1Q4G0I0 132 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TAF1BQ53T94 588 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CDHR3Q6ZTQ4 885 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CMC1Q7Z7K0 106 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 OOSP2Q86WS3 158 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 OR10G6Q8NH81 332 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 GDAP1Q8TB36 358 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 MCOLN3Q8TDD5 553 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 RHBDD1Q8TEB9 315 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 UBLCP1Q8WVY7 318 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PATE1Q8WXA2 126 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 C11orf24Q96F05 449 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TCTN2Q96GX1 697 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 METTL2AQ96IZ6 378 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 MIPEPQ99797 713 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PLCD4Q9BRC7 762 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 SLC6A20Q9NP91 592 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 RYDENQ9NUL5 291 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 OXSMQ9NWU1 459 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ACTR10Q9NZ32 417 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ARHGEF17Q96PE2 2063 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 A0A1W2PPM1 405 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 OR52A4PA6NMU1 304 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 NPHS1O60500 1241 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 WFS1O76024 890 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 DLGAP3O95886 979 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 VIPP01282 170 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 FGF4P08620 206 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 UGT2B7P16662 529 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 IMPDH1P20839 514 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PIK3CGP48736 1102 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 IL9RQ01113 521 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PRTGQ2VWP7 1150 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CRTC2Q53ET0 693 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CYB5D1Q6P9G0 228 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 RBM44Q6ZP01 1051 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 SLC22A9Q8IVM8 553 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PAF1Q8N7H5 531 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 GPATCH11Q8N954 259 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 SPDYE1Q8NFV5 336 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 OR2L3Q8NG85 312 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 CXorf40BQ96DE9 158 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ZDHHC12Q96GR4 267 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 GTPBP2Q9BX10 602 aaKnown RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 STMN4Q9H169 189 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ARGLU1Q9NWB6 273 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 ADGRE2Q9UHX3 823 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 MID2Q9UJV3 735 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 PCTPQ9UKL6 214 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 GRID1Q9ULK0 1009 aa6.77□□□□□ -1.33
LIMA1-202ENST00000394943 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM184BQ9Y519 407 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-202ENST00000394943 H0YIV9 168 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 SDC3O75056 442 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ZWINTO95229 277 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 IFI6P09912 130 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 GRIA3P42263 894 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF460Q14592 562 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 IL11RAQ14626 422 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 PCLAFQ15004 111 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ISXQ2M1V0 245 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF678Q5SXM1 525 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 LIPJQ5W064 366 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 SLCO4C1Q6ZQN7 724 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 DEPDC7Q96QD5 511 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms