RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 EURLQ9NYK6 297 aa9.36□□□□□ -0.91
VPS41-201ENST00000265745 PADI2Q9Y2J8 665 aa9.36□□□□□ -0.91
VPS41-201ENST00000265745 KLHL20Q9Y2M5 609 aa9.36□□□□□ -0.91
VPS41-201ENST00000265745 SEC16AO15027 2179 aa9.36□□□□□ -0.91
VPS41-201ENST00000265745 TCRBV7S3A2A0A539 114 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 TTLL8A6PVC2 850 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 KPNA5O15131 536 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 ZNF185O15231 689 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 PRICKLE3O43900 615 aaPredicted RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 CEP104O60308 925 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 NDUFS3O75489 264 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 VAPBO95292 243 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 CD63P08962 238 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MAGP20916 626 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MGAT1P26572 445 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 CXCR5P32302 372 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 RRADP55042 308 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 SRSF1Q07955 248 aaKnown RBP eCLIP9.35□□□□□ -0.91
VPS41-201ENST00000265745 TMED2Q15363 201 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 KCTD19Q17RG1 926 aaPredicted RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 NADK2Q4G0N4 442 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 NKAIN1Q4KMZ8 207 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 C1orf189Q5VU69 101 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MLIPQ5VWP3 458 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MRPL14Q6P1L8 145 aaKnown RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 CES3Q6UWW8 571 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 OTOAQ7RTW8 1153 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 LRRC6Q86X45 466 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MCATQ8IVS2 390 aaKnown RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 C2orf73Q8N5S3 287 aaPredicted RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 OR2L8Q8NGY9 312 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 SLC22A18Q96BI1 424 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 BIRC8Q96P09 236 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 IP6K3Q96PC2 410 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 IL17FQ96PD4 163 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 PANX3Q96QZ0 392 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 MRM3Q9HC36 420 aaKnown RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 ENAMQ9NRM1 1142 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 SLC22A11Q9NSA0 550 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 HOMER3Q9NSC5 361 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 IFT80Q9P2H3 777 aaPredicted RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 DHCR7Q9UBM7 475 aaKnown RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 CIDEBQ9UHD4 219 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 SLC39A10Q9ULF5 831 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 TTC7AQ9ULT0 858 aaPredicted RBP9.35□□□□□ -0.91
VPS41-201ENST00000265745 SRPK3Q9UPE1 567 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 ZNF451Q9Y4E5 1061 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 PCDHGB7Q9Y5F8 929 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 LRRK2Q5S007 2527 aa9.35□□□□□ -0.91
VPS41-201ENST00000265745 A6NL46 340 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 RASGRF2O14827 1237 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 CNOT3O75175 753 aaKnown RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 AVILO75366 819 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 C1orf105O95561 183 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 ONECUT2O95948 504 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 TPSB2P20231 275 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 ALAS2P22557 587 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 OTX2P32243 289 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 GRIA3P42263 894 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 MAGEA6P43360 314 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 ATP1A4Q13733 1029 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 SF1Q15637 639 aaKnown RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 TRIP13Q15645 432 aaPredicted RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 TPSAB1Q15661 275 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 CTSL3PQ5NE16 218 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 FCRL6Q6DN72 434 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 MRNIPQ6NTE8 343 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 TTC23LQ6PF05 361 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 FIGLAQ6QHK4 219 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 MRGPREQ86SM8 312 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 SDCCAG8Q86SQ7 713 aaPredicted RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 ATCAYQ86WG3 371 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 RAB43Q86YS6 212 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 OR2Y1Q8NGV0 311 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 GSDMBQ8TAX9 411 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 HMGCLL1Q8TB92 370 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 LPGAT1Q92604 370 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 ZUFSPQ96AP4 578 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 RAD51AP1Q96B01 352 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 PTERQ96BW5 349 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 TCF12Q99081 682 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 SMAD5Q99717 465 aaKnown RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 NDC1Q9BTX1 674 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 NUDT9Q9BW91 350 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 TXLNGQ9NUQ3 528 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 SYBUQ9NX95 663 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 GNPTGQ9UJJ9 305 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 SOX13Q9UN79 622 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 PTRH2Q9Y3E5 179 aaKnown RBP9.34□□□□□ -0.91
VPS41-201ENST00000265745 NFS1Q9Y697 457 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 FLNCQ14315 2725 aa9.34□□□□□ -0.91
VPS41-201ENST00000265745 COL12A1Q99715 3063 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 MAST4O15021 2626 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 TARM1B6A8C7 271 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 GOLGA8KD6RF30 607 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 H3BMM5 538 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 GOLGA8TH3BQL2 631 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 DPM1O60762 260 aa9.33□□□□□ -0.92
VPS41-201ENST00000265745 SORBS2O94875 1100 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms