RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 KRT87PA6NCN2 255 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 EFCAB8A8MWE9 144 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 SMAPO00193 183 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 PRICKLE3O43900 615 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 SEC31AO94979 1220 aaKnown RBP12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 TCN2P20062 427 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 GABRB3P28472 473 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 ELK3P41970 407 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 GABRA4P48169 554 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 TAX1BP1Q86VP1 789 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 EXD3Q8N9H8 876 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 C19orf47Q8N9M1 422 aaKnown RBP12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 C2CD4AQ8NCU7 369 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 SPATA4Q8NEY3 305 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 GIMAP7Q8NHV1 300 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 CT55Q8WUE5 264 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 FAM167BQ9BTA0 163 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 SEMA4CQ9C0C4 833 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 CHRNA10Q9GZZ6 450 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 CCDC68Q9H2F9 335 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 KLHL42Q9P2K6 505 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 KLHL20Q9Y2M5 609 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 SNX24Q9Y343 169 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 DHRS7Q9Y394 339 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 PCDHB3Q9Y5E6 796 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 MRFAP1Q9Y605 127 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 TEX264Q9Y6I9 313 aa12.29□□□□□ -0.44
PRPF40A-203ENST00000448428 CPNE3O75131 537 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 KATNA1O75449 491 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 PSIP1O75475 530 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 C1QL1O75973 258 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 PRKAR1AP10644 381 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CCNFP41002 786 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 RPL21P46778 160 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CARSP49589 748 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 ITGA1P56199 1179 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 TIAL1Q01085 375 aaKnown RBP eCLIP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 GPS2Q13227 327 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 SF1Q15637 639 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 HIF1AQ16665 826 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 LCN10Q6JVE6 187 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 C16orf46Q6P387 395 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 ZNF517Q6ZMY9 492 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 NEK10Q6ZWH5 1172 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 DNAJC22Q8N4W6 341 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 MAGEC3Q8TD91 643 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 DENND1AQ8TEH3 1009 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 STARD8Q92502 1023 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 KCNJ9Q92806 393 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 INPP5DQ92835 1189 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 SLC22A18Q96BI1 424 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CERS2Q96G23 380 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CFAP36Q96G28 342 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 RUFY1Q96T51 708 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 GPR21Q99679 349 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 WDR83Q9BRX9 315 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 AARSD1Q9BTE6 412 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 RAB11FIP5Q9BXF6 653 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 SPRTNQ9H040 489 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 ZC3H7BQ9UGR2 993 aaKnown RBP12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CHMP2BQ9UQN3 213 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 PCDHGA6Q9Y5G7 932 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 COMMD10Q9Y6G5 202 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 CCDC88CQ9P219 2028 aa12.28□□□□□ -0.44
PRPF40A-203ENST00000448428 ARHGEF33A8MVX0 844 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 H3BMH7 237 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 ZNF749O43361 778 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 AHSGP02765 367 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CTSBP07858 339 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CYP2A7P20853 494 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 MAGP20916 626 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 OAS2P29728 719 aaKnown RBP12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 ARL4CP56559 192 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 MC1RQ01726 317 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 C2orf54Q08AI8 447 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CDC20Q12834 499 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 DNASE1L3Q13609 305 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CUL1Q13616 776 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CYP2A13Q16696 494 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 DEFB110Q30KQ9 67 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 TTLL9Q3SXZ7 439 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CRTC2Q53ET0 693 aaPredicted RBP12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 TEDDM1Q5T9Z0 273 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 ATP1A1-AS1Q5TC04 95 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 TRMT10BQ6PF06 316 aaKnown RBP12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CYHR1Q6ZMK1 362 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 ANKMY2Q8IV38 441 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CNTN4Q8IWV2 1026 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 DSELQ8IZU8 1212 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 ZNF843Q8N446 348 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 OR9A1PQ8NGU1 263 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 HMGCLL1Q8TB92 370 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CD200R1Q8TD46 325 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 N4BP2L2Q92802 583 aaPredicted RBP12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 MR1Q95460 341 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 LRRC39Q96DD0 335 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 CLIP3Q96DZ5 547 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 MED8Q96G25 268 aa12.27□□□□□ -0.45
PRPF40A-203ENST00000448428 LRFN5Q96NI6 719 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms