RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C OYE3P41816 400 aaPredicted RBP5.37□□□□□ -1.55
RUB1YDR139C BAS1P22035 811 aa5.36□□□□□ -1.55
RUB1YDR139C YSC84P32793 468 aa5.36□□□□□ -1.55
RUB1YDR139C SEA4P38164 1038 aa5.36□□□□□ -1.55
RUB1YDR139C TOS1P38288 455 aa5.36□□□□□ -1.55
RUB1YDR139C YHL012WP38709 493 aa5.36□□□□□ -1.55
RUB1YDR139C GPB2P39717 880 aa5.36□□□□□ -1.55
RUB1YDR139C SNF7P39929 240 aaKnown RBP5.36□□□□□ -1.55
RUB1YDR139C OPI10Q08202 246 aa5.36□□□□□ -1.55
RUB1YDR139C TRE1Q08919 783 aa5.36□□□□□ -1.55
RUB1YDR139C RKM4Q12504 494 aa5.36□□□□□ -1.55
RUB1YDR139C PUF4P25339 888 aaKnown RBP RIP-Chip data5.35□□□□□ -1.55not detected
RUB1YDR139C MOT2P34909 587 aaKnown RBP5.35□□□□□ -1.55
RUB1YDR139C RPN3P40016 523 aaKnown RBP5.35□□□□□ -1.55
RUB1YDR139C TNA1P53322 534 aa5.35□□□□□ -1.55
RUB1YDR139C GNT1Q12096 491 aa5.35□□□□□ -1.55
RUB1YDR139C WRS1Q12109 432 aaKnown RBP5.35□□□□□ -1.55
RUB1YDR139C COQ4O13525 335 aa5.34□□□□□ -1.55
RUB1YDR139C PRI2P20457 528 aa5.34□□□□□ -1.55
RUB1YDR139C SRO9P25567 434 aaKnown RBP5.34□□□□□ -1.55
RUB1YDR139C MDL2P33311 773 aa5.34□□□□□ -1.55
RUB1YDR139C YKL107WP34251 309 aa5.34□□□□□ -1.55
RUB1YDR139C HOS3Q02959 697 aaKnown RBP5.34□□□□□ -1.55
RUB1YDR139C YLR225CQ05948 407 aaKnown RBP5.34□□□□□ -1.55
RUB1YDR139C GCD1P09032 578 aaPredicted RBP5.33□□□□□ -1.56
RUB1YDR139C YER152CP10356 443 aa5.33□□□□□ -1.56
RUB1YDR139C SAM35P14693 329 aa5.33□□□□□ -1.56
RUB1YDR139C AGP1P25376 633 aa5.33□□□□□ -1.56
RUB1YDR139C SBA1P28707 216 aaKnown RBP5.33□□□□□ -1.56
RUB1YDR139C ABD1P32783 436 aaPredicted RBP5.33□□□□□ -1.56
RUB1YDR139C CCZ1P38273 704 aa5.33□□□□□ -1.56
RUB1YDR139C PEX7P39108 375 aa5.33□□□□□ -1.56
RUB1YDR139C SSF2Q12153 453 aaPredicted RBP5.33□□□□□ -1.56
RUB1YDR139C RNQ1P25367 405 aa5.32□□□□□ -1.56
RUB1YDR139C ADP1P25371 1049 aa5.32□□□□□ -1.56
RUB1YDR139C PRO1P32264 428 aa5.32□□□□□ -1.56
RUB1YDR139C PIN4P34217 668 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
RUB1YDR139C YGL176CP46945 554 aa5.32□□□□□ -1.56
RUB1YDR139C SPP382Q06411 708 aaPredicted RBP5.32□□□□□ -1.56
RUB1YDR139C NBA1Q08229 501 aaKnown RBP5.32□□□□□ -1.56
RUB1YDR139C PUB1P32588 453 aaKnown RBP RIP-Chip data5.31□□□□□ -1.56not detected
RUB1YDR139C YKL069WP36088 180 aa5.31□□□□□ -1.56
RUB1YDR139C BAP2P38084 609 aa5.31□□□□□ -1.56
RUB1YDR139C PTC7P38797 343 aa5.31□□□□□ -1.56
RUB1YDR139C SDH1Q00711 640 aa5.31□□□□□ -1.56
RUB1YDR139C SSY1Q03770 852 aa5.31□□□□□ -1.56
RUB1YDR139C ESC2Q06340 456 aa5.31□□□□□ -1.56
RUB1YDR139C TDA5Q06417 326 aaKnown RBP5.31□□□□□ -1.56
RUB1YDR139C BRE4Q07660 1125 aa5.31□□□□□ -1.56
RUB1YDR139C YPL066WQ12194 479 aa5.31□□□□□ -1.56
RUB1YDR139C SNF5P18480 905 aa5.3□□□□□ -1.56
RUB1YDR139C PIK1P39104 1066 aa5.3□□□□□ -1.56
RUB1YDR139C SPF1P39986 1215 aaKnown RBP5.3□□□□□ -1.56
RUB1YDR139C GTS1P40956 396 aa5.3□□□□□ -1.56
RUB1YDR139C NNF1P47149 201 aa5.3□□□□□ -1.56
RUB1YDR139C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.3□□□□□ -1.56not detected
RUB1YDR139C SHE9Q04172 456 aa5.3□□□□□ -1.56
RUB1YDR139C RSC58Q07979 502 aa5.3□□□□□ -1.56
RUB1YDR139C RPL11AP0C0W9 174 aaKnown RBP5.29□□□□□ -1.56
RUB1YDR139C RCL1Q08096 367 aaPredicted RBP5.29□□□□□ -1.56
RUB1YDR139C RPL11BQ3E757 174 aaPredicted RBP5.29□□□□□ -1.56
RUB1YDR139C GRX1P25373 110 aaKnown RBP5.28□□□□□ -1.56
RUB1YDR139C MRP8P35719 219 aa5.28□□□□□ -1.56
RUB1YDR139C VBA5P36172 582 aa5.28□□□□□ -1.56
RUB1YDR139C PNT1P38969 423 aa5.28□□□□□ -1.56
RUB1YDR139C YJL049WP47048 450 aa5.28□□□□□ -1.56
RUB1YDR139C RSB1Q08417 382 aa5.28□□□□□ -1.56
RUB1YDR139C AIM26P32858 118 aa5.27□□□□□ -1.57
RUB1YDR139C MXR1P40029 184 aa5.27□□□□□ -1.57
RUB1YDR139C SIP5P40210 489 aaKnown RBP5.27□□□□□ -1.57
RUB1YDR139C ACM1Q08981 209 aa5.27□□□□□ -1.57
RUB1YDR139C HSP78P33416 811 aa5.26□□□□□ -1.57
RUB1YDR139C GEM1P39722 662 aa5.26□□□□□ -1.57
RUB1YDR139C YFL054CP43549 646 aa5.26□□□□□ -1.57
RUB1YDR139C FOL2P51601 243 aaKnown RBP5.26□□□□□ -1.57
RUB1YDR139C ORC3P54790 616 aa5.26□□□□□ -1.57
RUB1YDR139C NAN1Q02931 896 aaKnown RBP5.26□□□□□ -1.57
RUB1YDR139C LPX1Q12405 387 aaKnown RBP5.26□□□□□ -1.57
RUB1YDR139C THS1P04801 734 aaKnown RBP5.25□□□□□ -1.57
RUB1YDR139C SPS1P08458 490 aa5.25□□□□□ -1.57
RUB1YDR139C UGA2P38067 497 aa5.25□□□□□ -1.57
RUB1YDR139C PBY1P38254 753 aa5.25□□□□□ -1.57
RUB1YDR139C MBP1P39678 833 aa5.25□□□□□ -1.57
RUB1YDR139C IRR1P40541 1150 aa5.25□□□□□ -1.57
RUB1YDR139C DBP2P24783 546 aaKnown RBP5.24□□□□□ -1.57
RUB1YDR139C SLA2P33338 968 aa5.24□□□□□ -1.57
RUB1YDR139C STE5P32917 917 aa5.23□□□□□ -1.57
RUB1YDR139C YBR184WP38299 523 aa5.23□□□□□ -1.57
RUB1YDR139C TAT2P38967 592 aa5.23□□□□□ -1.57
RUB1YDR139C ENV11P53246 860 aa5.23□□□□□ -1.57
RUB1YDR139C RAD4P14736 754 aa5.22□□□□□ -1.57
RUB1YDR139C LRG1P35688 1017 aa5.22□□□□□ -1.57
RUB1YDR139C SEC26P41810 973 aaKnown RBP5.22□□□□□ -1.57
RUB1YDR139C ATG13Q06628 738 aa5.22□□□□□ -1.57
RUB1YDR139C SPO75Q07798 868 aa5.22□□□□□ -1.57
RUB1YDR139C SVS1Q12254 260 aa5.22□□□□□ -1.57
RUB1YDR139C PRP9P19736 530 aaKnown RBP5.21□□□□□ -1.58
RUB1YDR139C POL12P38121 705 aaPredicted RBP5.21□□□□□ -1.58
RUB1YDR139C OCA5P38738 679 aa5.21□□□□□ -1.58
RUB1YDR139C RRT14P40470 206 aa5.21□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms