RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 PTK7Q13308 1070 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 PRMT3O60678 531 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 DKK1O94907 266 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 PTGIRP43119 386 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 LCE2CQ5TA81 110 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 ESF1Q9H501 851 aaKnown RBP5.6□□□□□ -1.51
ZNF540-207ENST00000589285 SPINT1O43278 529 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 MYCP01106 439 aaPredicted RBP5.6□□□□□ -1.51
ZNF540-207ENST00000589285 TMEM164Q5U3C3 297 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 RNF217Q8TC41 542 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 HINFPQ9BQA5 517 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 CDV3Q9UKY7 258 aaKnown RBP5.6□□□□□ -1.51
ZNF540-207ENST00000589285 NOD1Q9Y239 953 aa5.6□□□□□ -1.51
ZNF540-207ENST00000589285 SENP3-EIF4A1A0A087X0R7 540 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 SOX11P35716 441 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 RNF20Q5VTR2 975 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 ZNF358Q9NW07 568 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L15C9J2P7 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L10C9JJH3 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L13C9JLJ4 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L12C9JPN9 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L11C9JVI0 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L21D6R901 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L18D6R9N7 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L22D6RA61 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L17D6RBQ6 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L19D6RCP7 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L20D6RJB6 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 CENPCQ03188 943 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 USP17L24Q0WX57 530 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 TLR1Q15399 786 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 SLC27A3Q5K4L6 730 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 AIDAQ96BJ3 306 aa5.59□□□□□ -1.51
ZNF540-207ENST00000589285 TSEN34Q9BSV6 310 aaKnown RBP5.59□□□□□ -1.51
ZNF540-207ENST00000589285 DNAAF2Q9NVR5 837 aaKnown RBP5.59□□□□□ -1.51
ZNF540-207ENST00000589285 CUEDC1Q9NWM3 386 aaPredicted RBP5.59□□□□□ -1.51
ZNF540-207ENST00000589285 GPR25O00155 361 aa5.59□□□□□ -1.52
ZNF540-207ENST00000589285 ARXQ96QS3 562 aa5.59□□□□□ -1.52
ZNF540-207ENST00000589285 LAMC3Q9Y6N6 1575 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 ZNF775Q96BV0 537 aaPredicted RBP5.58□□□□□ -1.52
ZNF540-207ENST00000589285 VRTNQ9H8Y1 702 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 INHAP05111 366 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 CLN3Q13286 438 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 MTMR3Q13615 1198 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 CRIPAKQ8N1N5 446 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 RETREG2Q8NC44 543 aa5.58□□□□□ -1.52
ZNF540-207ENST00000589285 SOS2Q07890 1332 aaPredicted RBP5.57□□□□□ -1.52
ZNF540-207ENST00000589285 C21orf2O43822 256 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 UPP2O95045 317 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 PTSQ03393 145 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 NOVA2Q9UNW9 492 aaKnown RBP5.57□□□□□ -1.52
ZNF540-207ENST00000589285 CTC1Q2NKJ3 1217 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 GAS2L1Q99501 681 aaPredicted RBP5.57□□□□□ -1.52
ZNF540-207ENST00000589285 ESYT1Q9BSJ8 1104 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 SCARF1Q14162 830 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 GRIN2CQ14957 1233 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 TRIM47Q96LD4 638 aa5.57□□□□□ -1.52
ZNF540-207ENST00000589285 PLA2G4AP47712 749 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 SMCPP49901 116 aaPredicted RBP5.56□□□□□ -1.52
ZNF540-207ENST00000589285 MAP7D1Q3KQU3 841 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 HCN2Q9UL51 889 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 PRDM2Q13029 1718 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 THOC2Q8NI27 1593 aaKnown RBP5.56□□□□□ -1.52
ZNF540-207ENST00000589285 FAM69CQ0P6D2 419 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 C4orf17Q53FE4 359 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 HCN4Q9Y3Q4 1203 aa5.56□□□□□ -1.52
ZNF540-207ENST00000589285 NAA30Q147X3 362 aaPredicted RBP5.55□□□□□ -1.52
ZNF540-207ENST00000589285 CYP2U1Q7Z449 544 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 ZDHHC1Q8WTX9 485 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 NGLY1Q96IV0 654 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 FHDC1Q9C0D6 1143 aaPredicted RBP5.55□□□□□ -1.52
ZNF540-207ENST00000589285 SERPINA10Q9UK55 444 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 TXLNAP40222 546 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 RIPOR1Q6ZS17 1223 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 ANKMY2Q8IV38 441 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 SCG3Q8WXD2 468 aaKnown RBP5.55□□□□□ -1.52
ZNF540-207ENST00000589285 NLRP3Q96P20 1036 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 RUBCNLQ9H714 662 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 IQSEC3Q9UPP2 1182 aaPredicted RBP5.55□□□□□ -1.52
ZNF540-207ENST00000589285 ERBB4Q15303 1308 aa5.55□□□□□ -1.52
ZNF540-207ENST00000589285 CDC14CA4D256 554 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 THBS1P07996 1170 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 EPHA4P54764 986 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 SLC9A9Q8IVB4 645 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 PBXIP1Q96AQ6 731 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 ZSCAN10Q96SZ4 725 aaPredicted RBP5.54□□□□□ -1.52
ZNF540-207ENST00000589285 WDR97A6NE52 1622 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 ZNF295-AS1Q8N0V1 137 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 HRH3Q9Y5N1 445 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 A6NJY4 79 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 FAM26DQ5JW98 314 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 TMEM214Q6NUQ4 689 aaKnown RBP5.54□□□□□ -1.52
ZNF540-207ENST00000589285 PLEKHM2Q8IWE5 1019 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 NFATC2IPQ8NCF5 419 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 CABP1Q9NZU7 370 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 SEPT3Q9UH03 358 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 ZNF232Q9UNY5 417 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 USP20Q9Y2K6 914 aa5.54□□□□□ -1.52
ZNF540-207ENST00000589285 GNRH1P01148 92 aa5.53□□□□□ -1.52
ZNF540-207ENST00000589285 LARP1Q6PKG0 1096 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms