RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 C2CD2LO14523 706 aa9□□□□□ -0.97
SMCHD1-209ENST00000583441 SPATA31C1P0DKV0 1188 aa9□□□□□ -0.97
SMCHD1-209ENST00000583441 PRSS36Q5K4E3 855 aa9□□□□□ -0.97
SMCHD1-209ENST00000583441 RNF135Q8IUD6 432 aa9□□□□□ -0.97
SMCHD1-209ENST00000583441 LRP8Q14114 963 aa8.99□□□□□ -0.97
SMCHD1-209ENST00000583441 SEPT12Q8IYM1 358 aa8.99□□□□□ -0.97
SMCHD1-209ENST00000583441 ATXN7L1Q9ULK2 861 aaPredicted RBP8.99□□□□□ -0.97
SMCHD1-209ENST00000583441 NR6A1Q15406 480 aa8.98□□□□□ -0.97
SMCHD1-209ENST00000583441 NEURL1BA8MQ27 555 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 FGFR3P22607 806 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 LBRQ14739 615 aaKnown RBP8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 CHSY3Q70JA7 882 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 PARP9Q8IXQ6 854 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 LRRN4Q8WUT4 740 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 PLVAPQ9BX97 442 aa8.97□□□□□ -0.97
SMCHD1-209ENST00000583441 CSB-PGBD3P0DP91 1061 aa8.96□□□□□ -0.98
SMCHD1-209ENST00000583441 ARAFP10398 606 aa8.96□□□□□ -0.98
SMCHD1-209ENST00000583441 CTBSQ01459 385 aa8.96□□□□□ -0.98
SMCHD1-209ENST00000583441 LCE1DQ5T752 114 aa8.96□□□□□ -0.98
SMCHD1-209ENST00000583441 PGBD3Q8N328 593 aa8.96□□□□□ -0.98
SMCHD1-209ENST00000583441 CLN3Q13286 438 aa8.95□□□□□ -0.98
SMCHD1-209ENST00000583441 ABHD17AQ96GS6 310 aa8.95□□□□□ -0.98
SMCHD1-209ENST00000583441 HYAL3O43820 417 aaPredicted RBP8.94□□□□□ -0.98
SMCHD1-209ENST00000583441 APBA3O96018 575 aa8.94□□□□□ -0.98
SMCHD1-209ENST00000583441 UBAP2LQ14157 1087 aaKnown RBP8.94□□□□□ -0.98
SMCHD1-209ENST00000583441 A0A1B0GTH6 734 aa8.93□□□□□ -0.98
SMCHD1-209ENST00000583441 EFHC2Q5JST6 749 aa8.93□□□□□ -0.98
SMCHD1-209ENST00000583441 BARGINQ6ZT62 677 aa8.93□□□□□ -0.98
SMCHD1-209ENST00000583441 TRIM11Q96F44 468 aa8.93□□□□□ -0.98
SMCHD1-209ENST00000583441 YBX3P16989 372 aaKnown RBP eCLIP8.92□□□□□ -0.98
SMCHD1-209ENST00000583441 PHKA2P46019 1235 aa8.92□□□□□ -0.98
SMCHD1-209ENST00000583441 PNMA1Q8ND90 353 aa8.92□□□□□ -0.98
SMCHD1-209ENST00000583441 SPDYE3A6NKU9 549 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 TXKP42681 527 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 CLK2P49760 499 aaKnown RBP8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 PRRT3Q5FWE3 981 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 CC2D2BQ6DHV5 1058 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 CYP2U1Q7Z449 544 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 RUBCNLQ9H714 662 aa8.91□□□□□ -0.98
SMCHD1-209ENST00000583441 BNIP3LO60238 219 aa8.9□□□□□ -0.98
SMCHD1-209ENST00000583441 MCTP1Q6DN14 999 aa8.9□□□□□ -0.98
SMCHD1-209ENST00000583441 PAX4O43316 350 aa8.89□□□□□ -0.99
SMCHD1-209ENST00000583441 ERVK-9P63128 1117 aa8.88□□□□□ -0.99
SMCHD1-209ENST00000583441 ARHGEF10LQ9HCE6 1279 aa8.88□□□□□ -0.99
SMCHD1-209ENST00000583441 NDFIP2Q9NV92 336 aa8.88□□□□□ -0.99
SMCHD1-209ENST00000583441 ADH6P28332 368 aa8.87□□□□□ -0.99
SMCHD1-209ENST00000583441 HAP1P54257 671 aaPredicted RBP8.87□□□□□ -0.99
SMCHD1-209ENST00000583441 GIGYF1O75420 1035 aaPredicted RBP8.86□□□□□ -0.99
SMCHD1-209ENST00000583441 GTF2E1P29083 439 aaPredicted RBP8.86□□□□□ -0.99
SMCHD1-209ENST00000583441 CCDC125Q86Z20 511 aa8.86□□□□□ -0.99
SMCHD1-209ENST00000583441 ESF1Q9H501 851 aaKnown RBP8.86□□□□□ -0.99
SMCHD1-209ENST00000583441 ZMYND10O75800 440 aa8.85□□□□□ -0.99
SMCHD1-209ENST00000583441 MSX1P28360 303 aa8.85□□□□□ -0.99
SMCHD1-209ENST00000583441 GNASQ5JWF2 1037 aa8.84□□□□□ -0.99
SMCHD1-209ENST00000583441 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.84□□□□□ -0.99
SMCHD1-209ENST00000583441 NACC1Q96RE7 527 aa8.84□□□□□ -0.99
SMCHD1-209ENST00000583441 ZSCAN10Q96SZ4 725 aaPredicted RBP8.84□□□□□ -0.99
SMCHD1-209ENST00000583441 POLR3EQ9NVU0 708 aa8.84□□□□□ -0.99
SMCHD1-209ENST00000583441 H2AFB1P0C5Y9 115 aa8.83□□□□□ -1
SMCHD1-209ENST00000583441 H2AFB2P0C5Z0 115 aa8.83□□□□□ -1
SMCHD1-209ENST00000583441 CENPCQ03188 943 aa8.83□□□□□ -1
SMCHD1-209ENST00000583441 TRIM66O15016 1216 aa8.82□□□□□ -1
SMCHD1-209ENST00000583441 FIGNL1Q6PIW4 674 aa8.82□□□□□ -1
SMCHD1-209ENST00000583441 FCHSD1Q86WN1 690 aa8.82□□□□□ -1
SMCHD1-209ENST00000583441 CNKSR1Q969H4 720 aa8.82□□□□□ -1
SMCHD1-209ENST00000583441 RAB6BQ9NRW1 208 aa8.82□□□□□ -1
SMCHD1-209ENST00000583441 TMEM214Q6NUQ4 689 aaKnown RBP8.81□□□□□ -1
SMCHD1-209ENST00000583441 ESYT1Q9BSJ8 1104 aa8.81□□□□□ -1
SMCHD1-209ENST00000583441 RSPH6AQ9H0K4 717 aa8.81□□□□□ -1
SMCHD1-209ENST00000583441 KLF15Q9UIH9 416 aa8.81□□□□□ -1
SMCHD1-209ENST00000583441 RNF20Q5VTR2 975 aa8.8□□□□□ -1
SMCHD1-209ENST00000583441 VSIG10Q8N0Z9 540 aa8.8□□□□□ -1
SMCHD1-209ENST00000583441 EPS8L1Q8TE68 723 aa8.8□□□□□ -1
SMCHD1-209ENST00000583441 AVENQ9NQS1 362 aaPredicted RBP8.8□□□□□ -1
SMCHD1-209ENST00000583441 PCDHGC4Q9Y5F7 938 aa8.8□□□□□ -1
SMCHD1-209ENST00000583441 C4orf17Q53FE4 359 aa8.79□□□□□ -1
SMCHD1-209ENST00000583441 PCDHB9Q9Y5E1 797 aa8.79□□□□□ -1
SMCHD1-209ENST00000583441 COL17A1Q9UMD9 1497 aaPredicted RBP8.78□□□□□ -1
SMCHD1-209ENST00000583441 FAM229AH3BQW9 127 aa8.78□□□□□ -1
SMCHD1-209ENST00000583441 SCTRP47872 440 aa8.78□□□□□ -1
SMCHD1-209ENST00000583441 TRIM28Q13263 835 aaKnown RBP8.78□□□□□ -1
SMCHD1-209ENST00000583441 ZCCHC2Q9C0B9 1178 aaKnown RBP8.78□□□□□ -1
SMCHD1-209ENST00000583441 CRISPLD1Q9H336 500 aa8.78□□□□□ -1
SMCHD1-209ENST00000583441 OSBPL3Q9H4L5 887 aa8.78□□□□□ -1
SMCHD1-209ENST00000583441 TRAK2O60296 914 aa8.77□□□□□ -1.01
SMCHD1-209ENST00000583441 GNRH1P01148 92 aa8.77□□□□□ -1.01
SMCHD1-209ENST00000583441 ELNP15502 786 aa8.77□□□□□ -1.01
SMCHD1-209ENST00000583441 IL2RAP01589 272 aa8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 ALAS2P22557 587 aa8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 PCBP4P57723 403 aaKnown RBP8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 FZD5Q13467 585 aa8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 FMNL2Q96PY5 1086 aa8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 PRR12Q9ULL5 1215 aa8.76□□□□□ -1.01
SMCHD1-209ENST00000583441 AP1G2O75843 785 aa8.75□□□□□ -1.01
SMCHD1-209ENST00000583441 FAM182BQ5T319 152 aa8.75□□□□□ -1.01
SMCHD1-209ENST00000583441 ATXN7O15265 892 aaPredicted RBP8.74□□□□□ -1.01
SMCHD1-209ENST00000583441 CD33P20138 364 aa8.74□□□□□ -1.01
SMCHD1-209ENST00000583441 GRIK4Q16099 956 aa8.74□□□□□ -1.01
SMCHD1-209ENST00000583441 PCDHB11Q9Y5F2 797 aa8.74□□□□□ -1.01
SMCHD1-209ENST00000583441 KRTAP4-9Q9BYQ8 210 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms