RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	RIPK4	P57078	832 aa		11.29	□□□□□ -0.6
TRPM1-208	ENST00000558768	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.29	□□□□□ -0.6
TRPM1-208	ENST00000558768	MAP3K11	Q16584	847 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	RBSN	Q9H1K0	784 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CCDC6	Q16204	474 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CCDC83	Q8IWF9	413 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	DRC1	Q96MC2	740 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CC2D2A	Q9P2K1	1620 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CARMIL2	Q6F5E8	1435 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	POLA1	P09884	1462 aa	Predicted RBP	11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	IGSF3	O75054	1194 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	C9orf84	Q5VXU9	1444 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	MIPOL1	Q8TD10	442 aa		11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CDK13	Q14004	1512 aa	Known RBP	11.28	□□□□□ -0.6
TRPM1-208	ENST00000558768	CASQ1	P31415	396 aa		11.27	□□□□□ -0.6
TRPM1-208	ENST00000558768	PIK3C2G	O75747	1445 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	GSDMD	P57764	484 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	ZNF397	Q8NF99	534 aa	Predicted RBP	11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	TRO	Q12816	1431 aa	Predicted RBP	11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	MTHFS	P49914	203 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	STK38	Q15208	465 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	RBBP5	Q15291	538 aa	Known RBP	11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	SPECC1	Q5M775	1068 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	SEPT14	Q6ZU15	432 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	KANK1	Q14678	1352 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	BICRA	Q9NZM4	1560 aa		11.27	□□□□□ -0.61
TRPM1-208	ENST00000558768	CLNS1A	P54105	237 aa	Known RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	DDX46	Q7L014	1031 aa	Known RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TRMT2A	Q8IZ69	625 aa	Known RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	GAS2L2	Q8NHY3	880 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TESK2	Q96S53	571 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	RBM27	Q9P2N5	1060 aa	Known RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	PZP	P20742	1482 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	STAMBP	O95630	424 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TMEM57	Q8N5G2	664 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TAF4B	Q92750	862 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	MYZAP	P0CAP1	466 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	DNAJC21	Q5F1R6	531 aa	Known RBP	11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	ZNF521	Q96K83	1311 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	FYB1	O15117	783 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TUBB4A	P04350	444 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	RLBP1	P12271	317 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	PAFAH1B1	P43034	410 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	IFFO1	Q0D2I5	559 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	VPS53	Q5VIR6	699 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	MSL1	Q68DK7	614 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	TBC1D9	Q6ZT07	1266 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC171	Q6TFL3	1326 aa		11.26	□□□□□ -0.61
TRPM1-208	ENST00000558768	NUCB1	Q02818	461 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CEP135	Q66GS9	1140 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CNKSR2	Q8WXI2	1034 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	FEZ2	Q9UHY8	353 aa	Predicted RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	KDM5C	P41229	1560 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	USP25	Q9UHP3	1055 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CAMSAP2	Q08AD1	1489 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC160	A6NGH7	325 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	TSR2	Q969E8	191 aa	Known RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	LUC7L2	Q9Y383	392 aa	Known RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC183	Q5T5S1	534 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	RPAIN	Q86UA6	219 aa		11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	SRRT	Q9BXP5	876 aa	Known RBP	11.25	□□□□□ -0.61
TRPM1-208	ENST00000558768	CFAP100	Q494V2	611 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	ZNF428	Q96B54	188 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	TRIM27	P14373	513 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	SNW1	Q13573	536 aa	Known RBP	11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC121	Q6ZUS5	278 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	SH3BGR	P55822	239 aa	Predicted RBP	11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	TUBB4B	P68371	445 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC114	Q96M63	670 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	PRAG1	Q86YV5	1406 aa		11.24	□□□□□ -0.61
TRPM1-208	ENST00000558768	ERC2	O15083	957 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	VGF	O15240	615 aa	Predicted RBP	11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	SSH1	Q8WYL5	1049 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC113	Q9H0I3	377 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	CLIP2	Q9UDT6	1046 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	POTED	Q86YR6	584 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	NEBL	O76041	1014 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	ADCY5	O95622	1261 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	TUBB	P07437	444 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	HSP90AB4P	Q58FF6	505 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	NBPF11	Q86T75	865 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	SLU7	O95391	586 aa	Known RBP	11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	XBP1	P17861	261 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	CCDC50	Q8IVM0	306 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	PIBF1	Q8WXW3	757 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	HYPK	Q9NX55	129 aa		11.23	□□□□□ -0.61
TRPM1-208	ENST00000558768	IFIT2	P09913	472 aa	Known RBP	11.22	□□□□□ -0.61
TRPM1-208	ENST00000558768	LMNTD2	Q8IXW0	634 aa		11.22	□□□□□ -0.61
TRPM1-208	ENST00000558768	CEP112	Q8N8E3	955 aa		11.22	□□□□□ -0.61
TRPM1-208	ENST00000558768	NAA15	Q9BXJ9	866 aa	Known RBP	11.22	□□□□□ -0.61
TRPM1-208	ENST00000558768	GCK	P35557	465 aa		11.22	□□□□□ -0.61
TRPM1-208	ENST00000558768	STIM1	Q13586	685 aa		11.22	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms