RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ARHGEF10LQ9HCE6 1279 aa8.54□□□□□ -1.04
VPS29-205ENST00000548539 GPAMQ9HCL2 828 aa8.54□□□□□ -1.04
VPS29-205ENST00000548539 PIK3R2O00459 728 aa8.53□□□□□ -1.04
VPS29-205ENST00000548539 GOLGA6L1Q8N7Z2 621 aa8.53□□□□□ -1.04
VPS29-205ENST00000548539 THBS1P07996 1170 aa8.52□□□□□ -1.05
VPS29-205ENST00000548539 SCTRP47872 440 aa8.52□□□□□ -1.05
VPS29-205ENST00000548539 TRIM34Q9BYJ4 488 aa8.52□□□□□ -1.05
VPS29-205ENST00000548539 TIMELESSQ9UNS1 1208 aa8.52□□□□□ -1.05
VPS29-205ENST00000548539 RFC5P40937 340 aa8.51□□□□□ -1.05
VPS29-205ENST00000548539 LINC00114Q6XXX2 140 aa8.51□□□□□ -1.05
VPS29-205ENST00000548539 FAM117AQ9C073 453 aa8.51□□□□□ -1.05
VPS29-205ENST00000548539 SUV39H2Q9H5I1 410 aa8.51□□□□□ -1.05
VPS29-205ENST00000548539 A0A1B0GTH6 734 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 C1QTNF9BB2RNN3 333 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 FBXO45P0C2W1 286 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 CSB-PGBD3P0DP91 1061 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 BMP4P12644 408 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 PHKA2P46019 1235 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 LBRQ14739 615 aaKnown RBP8.5□□□□□ -1.05
VPS29-205ENST00000548539 PGBD3Q8N328 593 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 KDM4CQ9H3R0 1056 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 OSBPL3Q9H4L5 887 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 PCDHB11Q9Y5F2 797 aa8.5□□□□□ -1.05
VPS29-205ENST00000548539 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.49□□□□□ -1.05
VPS29-205ENST00000548539 GNB5O14775 395 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 TRAK2O60296 914 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 MCCD1P59942 119 aaPredicted RBP8.49□□□□□ -1.05
VPS29-205ENST00000548539 CENPCQ03188 943 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 CNKSR1Q969H4 720 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 ESYT1Q9BSJ8 1104 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 RAB6BQ9NRW1 208 aa8.49□□□□□ -1.05
VPS29-205ENST00000548539 GNRH1P01148 92 aa8.48□□□□□ -1.05
VPS29-205ENST00000548539 GTF2E1P29083 439 aaPredicted RBP8.48□□□□□ -1.05
VPS29-205ENST00000548539 CD163Q86VB7 1156 aa8.48□□□□□ -1.05
VPS29-205ENST00000548539 ZSCAN10Q96SZ4 725 aaPredicted RBP8.48□□□□□ -1.05
VPS29-205ENST00000548539 GGA1Q9UJY5 639 aa8.48□□□□□ -1.05
VPS29-205ENST00000548539 ATXN7L1Q9ULK2 861 aaPredicted RBP8.48□□□□□ -1.05
VPS29-205ENST00000548539 HOXB4P17483 251 aaPredicted RBP8.47□□□□□ -1.05
VPS29-205ENST00000548539 UBAP2LQ14157 1087 aaKnown RBP8.47□□□□□ -1.05
VPS29-205ENST00000548539 EFHC2Q5JST6 749 aa8.47□□□□□ -1.05
VPS29-205ENST00000548539 SLCO4C1Q6ZQN7 724 aa8.47□□□□□ -1.05
VPS29-205ENST00000548539 ZNF592Q92610 1267 aa8.47□□□□□ -1.05
VPS29-205ENST00000548539 RUBCNLQ9H714 662 aa8.47□□□□□ -1.05
VPS29-205ENST00000548539 TMEM259Q4ZIN3 620 aa8.46□□□□□ -1.06
VPS29-205ENST00000548539 GNASQ5JWF2 1037 aa8.46□□□□□ -1.06
VPS29-205ENST00000548539 IL27Q8NEV9 243 aa8.46□□□□□ -1.06
VPS29-205ENST00000548539 BTBD6Q96KE9 485 aa8.46□□□□□ -1.06
VPS29-205ENST00000548539 NOP53Q9NZM5 478 aaKnown RBP8.46□□□□□ -1.06
VPS29-205ENST00000548539 C2CD2LO14523 706 aa8.45□□□□□ -1.06
VPS29-205ENST00000548539 IL2RAP01589 272 aa8.45□□□□□ -1.06
VPS29-205ENST00000548539 TMEM214Q6NUQ4 689 aaKnown RBP8.45□□□□□ -1.06
VPS29-205ENST00000548539 ABHD17AQ96GS6 310 aa8.45□□□□□ -1.06
VPS29-205ENST00000548539 SEMA6BQ9H3T3 888 aa8.45□□□□□ -1.06
VPS29-205ENST00000548539 EPXP11678 715 aa8.44□□□□□ -1.06
VPS29-205ENST00000548539 FGFR3P22607 806 aa8.44□□□□□ -1.06
VPS29-205ENST00000548539 CHRNA4P43681 627 aa8.44□□□□□ -1.06
VPS29-205ENST00000548539 CTBSQ01459 385 aa8.44□□□□□ -1.06
VPS29-205ENST00000548539 KRTAP9-2Q9BYQ4 174 aa8.44□□□□□ -1.06
VPS29-205ENST00000548539 ZNF330Q9Y3S2 320 aaPredicted RBP8.44□□□□□ -1.06
VPS29-205ENST00000548539 MSX1P28360 303 aa8.43□□□□□ -1.06
VPS29-205ENST00000548539 NR1H3Q13133 447 aa8.43□□□□□ -1.06
VPS29-205ENST00000548539 BNIP3LO60238 219 aa8.42□□□□□ -1.06
VPS29-205ENST00000548539 MYCP01106 439 aaPredicted RBP8.42□□□□□ -1.06
VPS29-205ENST00000548539 C4orf17Q53FE4 359 aa8.42□□□□□ -1.06
VPS29-205ENST00000548539 XAGE2Q96GT9 111 aa8.42□□□□□ -1.06
VPS29-205ENST00000548539 KRTAP9-6A0A140TA67 174 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 ARAFP10398 606 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 DGKGP49619 791 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 DOC2BQ14184 412 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 RNF135Q8IUD6 432 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 NDFIP2Q9NV92 336 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 HRH3Q9Y5N1 445 aa8.41□□□□□ -1.06
VPS29-205ENST00000548539 NEURL1BA8MQ27 555 aa8.4□□□□□ -1.06
VPS29-205ENST00000548539 ITGB7P26010 798 aa8.4□□□□□ -1.06
VPS29-205ENST00000548539 ESCO1Q5FWF5 840 aa8.4□□□□□ -1.06
VPS29-205ENST00000548539 ZMYM1Q5SVZ6 1142 aa8.4□□□□□ -1.06
VPS29-205ENST00000548539 GJD4Q96KN9 370 aaPredicted RBP8.4□□□□□ -1.06
VPS29-205ENST00000548539 FHDC1Q9C0D6 1143 aaPredicted RBP8.4□□□□□ -1.06
VPS29-205ENST00000548539 FIGNL1Q6PIW4 674 aa8.39□□□□□ -1.07
VPS29-205ENST00000548539 C14orf37Q86TY3 774 aa8.39□□□□□ -1.07
VPS29-205ENST00000548539 PCMTD1Q96MG8 357 aaPredicted RBP8.38□□□□□ -1.07
VPS29-205ENST00000548539 CRISPLD1Q9H336 500 aa8.38□□□□□ -1.07
VPS29-205ENST00000548539 CHSY3Q70JA7 882 aa8.37□□□□□ -1.07
VPS29-205ENST00000548539 RHBDD1Q8TEB9 315 aa8.37□□□□□ -1.07
VPS29-205ENST00000548539 GATA4P43694 442 aa8.36□□□□□ -1.07
VPS29-205ENST00000548539 CDCA7Q9BWT1 371 aaPredicted RBP8.36□□□□□ -1.07
VPS29-205ENST00000548539 PCDHGC4Q9Y5F7 938 aa8.36□□□□□ -1.07
VPS29-205ENST00000548539 ADH6P28332 368 aa8.35□□□□□ -1.07
VPS29-205ENST00000548539 PPARGC1BQ86YN6 1023 aaKnown RBP8.35□□□□□ -1.07
VPS29-205ENST00000548539 ZCCHC2Q9C0B9 1178 aaKnown RBP8.35□□□□□ -1.07
VPS29-205ENST00000548539 TBC1D9Q6ZT07 1266 aa8.34□□□□□ -1.07
VPS29-205ENST00000548539 KRTAP1-3Q8IUG1 177 aa8.34□□□□□ -1.07
VPS29-205ENST00000548539 GOPCQ9HD26 462 aa8.34□□□□□ -1.07
VPS29-205ENST00000548539 TLR1Q15399 786 aa8.33□□□□□ -1.08
VPS29-205ENST00000548539 ERICH6Q7L0X2 663 aa8.33□□□□□ -1.08
VPS29-205ENST00000548539 CCDC85AQ96PX6 553 aaPredicted RBP8.33□□□□□ -1.08
VPS29-205ENST00000548539 PLVAPQ9BX97 442 aa8.33□□□□□ -1.08
VPS29-205ENST00000548539 CEP126Q9P2H0 1117 aa8.33□□□□□ -1.08
VPS29-205ENST00000548539 SCO2A0A1W2PP80 73 aa8.32□□□□□ -1.08
VPS29-205ENST00000548539 ATXN7O15265 892 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms