RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 TRPC5Q9UL62 973 aaPredicted RBP6.63□□□□□ -1.35
VPS52-222ENST00000495981 XRN1Q8IZH2 1706 aaKnown RBP6.62□□□□□ -1.35
VPS52-222ENST00000495981 SHPRHQ149N8 1683 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 NRXN3Q9Y4C0 1643 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 SLC10A3P09131 477 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 FDX1P10109 184 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 KCNA1Q09470 495 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 LCE2DQ5TA82 110 aaPredicted RBP6.62□□□□□ -1.35
VPS52-222ENST00000495981 EPS8L1Q8TE68 723 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 LRRN4Q8WUT4 740 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 ZSWIM6Q9HCJ5 1215 aa6.62□□□□□ -1.35
VPS52-222ENST00000495981 CHD2O14647 1828 aaKnown RBP6.62□□□□□ -1.35
VPS52-222ENST00000495981 LRP5O75197 1615 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 BLMP54132 1417 aaPredicted RBP6.61□□□□□ -1.35
VPS52-222ENST00000495981 SENP3-EIF4A1A0A087X0R7 540 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 PALM3A6NDB9 673 aaPredicted RBP6.61□□□□□ -1.35
VPS52-222ENST00000495981 CFAP99D6REC4 459 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 ATF3P18847 181 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 USP46P62068 366 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 R3HDM1Q15032 1099 aaKnown RBP6.61□□□□□ -1.35
VPS52-222ENST00000495981 WASHC4Q2M389 1173 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 PROX2Q3B8N5 592 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 RDH13Q8NBN7 331 aa6.61□□□□□ -1.35
VPS52-222ENST00000495981 LRRC59Q96AG4 307 aaKnown RBP6.61□□□□□ -1.35
VPS52-222ENST00000495981 TMEM88BA6NKF7 163 aa6.6□□□□□ -1.35
VPS52-222ENST00000495981 PDE4CQ08493 712 aa6.6□□□□□ -1.35
VPS52-222ENST00000495981 PPP4R3BQ5MIZ7 849 aa6.6□□□□□ -1.35
VPS52-222ENST00000495981 ZNF784Q8NCA9 323 aaPredicted RBP6.6□□□□□ -1.35
VPS52-222ENST00000495981 PTPRUQ92729 1446 aa6.59□□□□□ -1.35
VPS52-222ENST00000495981 SPHKAPQ2M3C7 1700 aa6.59□□□□□ -1.35
VPS52-222ENST00000495981 HOXB1P14653 301 aaPredicted RBP6.59□□□□□ -1.35
VPS52-222ENST00000495981 PTPREP23469 700 aa6.59□□□□□ -1.35
VPS52-222ENST00000495981 PRR7Q8TB68 274 aa6.59□□□□□ -1.35
VPS52-222ENST00000495981 ASXL1Q8IXJ9 1541 aa6.59□□□□□ -1.35
VPS52-222ENST00000495981 ANKRD30AQ9BXX3 1397 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 TSPY4P0CV99 314 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 TSPY10P0CW01 314 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 PACS2Q86VP3 889 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 TBX22Q9Y458 520 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 NALCNQ8IZF0 1738 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 MST1RQ04912 1400 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 ADAMTS13Q76LX8 1427 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 NCOA3Q9Y6Q9 1424 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 NHSL1Q5SYE7 1610 aa6.58□□□□□ -1.36
VPS52-222ENST00000495981 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.57□□□□□ -1.36
VPS52-222ENST00000495981 PATL2C9JE40 543 aaKnown RBP6.57□□□□□ -1.36
VPS52-222ENST00000495981 CSB-PGBD3P0DP91 1061 aa6.57□□□□□ -1.36
VPS52-222ENST00000495981 MTMR2Q13614 643 aa6.57□□□□□ -1.36
VPS52-222ENST00000495981 MARVELD3Q96A59 401 aa6.57□□□□□ -1.36
VPS52-222ENST00000495981 TFIP11Q9UBB9 837 aaKnown RBP6.57□□□□□ -1.36
VPS52-222ENST00000495981 ANKRD50Q9ULJ7 1429 aa6.57□□□□□ -1.36
VPS52-222ENST00000495981 PLEKHG1Q9ULL1 1385 aa6.57□□□□□ -1.36
VPS52-222ENST00000495981 ATG7O95352 703 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 LMOD1P29536 600 aaPredicted RBP6.56□□□□□ -1.36
VPS52-222ENST00000495981 EMP3P54852 163 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 C1QTNF8P60827 252 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 SEPT12Q8IYM1 358 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 ORAI2Q96SN7 254 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 AMOTL2Q9Y2J4 779 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 MAFBQ9Y5Q3 323 aaPredicted RBP6.56□□□□□ -1.36
VPS52-222ENST00000495981 IVNS1ABPQ9Y6Y0 642 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 CLTCL1P53675 1640 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 KANK1Q14678 1352 aa6.56□□□□□ -1.36
VPS52-222ENST00000495981 TRPM2O94759 1503 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 SOS2Q07890 1332 aaPredicted RBP6.55□□□□□ -1.36
VPS52-222ENST00000495981 LAMC1P11047 1609 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 LOC105371045A0A1W2PR82 267 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 POTEMA6NI47 508 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 PER1O15534 1290 aaPredicted RBP6.55□□□□□ -1.36
VPS52-222ENST00000495981 RBM25P49756 843 aaKnown RBP6.55□□□□□ -1.36
VPS52-222ENST00000495981 FAM182BQ5T319 152 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 SWT1Q5T5J6 900 aaKnown RBP6.55□□□□□ -1.36
VPS52-222ENST00000495981 POTEGQ6S5H5 508 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 NEXMIFQ5QGS0 1516 aa6.55□□□□□ -1.36
VPS52-222ENST00000495981 RALGAPBQ86X10 1494 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 RIMS2Q9UQ26 1411 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 CDCA8Q53HL2 280 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 TBC1D9Q6ZT07 1266 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 HELBQ8NG08 1087 aaPredicted RBP6.54□□□□□ -1.36
VPS52-222ENST00000495981 SYMPKQ92797 1274 aaKnown RBP6.54□□□□□ -1.36
VPS52-222ENST00000495981 ZBED2Q9BTP6 218 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 VRTNQ9H8Y1 702 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 RRP7BPQ9NSQ0 103 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 KIAA1468Q9P260 1216 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 ROCK1Q13464 1354 aa6.54□□□□□ -1.36
VPS52-222ENST00000495981 FUT2Q10981 343 aa6.53□□□□□ -1.36
VPS52-222ENST00000495981 NR6A1Q15406 480 aa6.53□□□□□ -1.36
VPS52-222ENST00000495981 EZH2Q15910 746 aaKnown RBP6.53□□□□□ -1.36
VPS52-222ENST00000495981 KCNK17Q96T54 332 aa6.53□□□□□ -1.36
VPS52-222ENST00000495981 ERBB3P21860 1342 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 DCCP43146 1447 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 PTCH1Q13635 1447 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 PRAG1Q86YV5 1406 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 FAM205CA6NFA0 338 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 SOX11P35716 441 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 SF3B2Q13435 895 aaKnown RBP6.52□□□□□ -1.37
VPS52-222ENST00000495981 SND1Q7KZF4 910 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS52-222ENST00000495981 UNC5CLQ8IV45 518 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 SLF2Q8IX21 1173 aa6.52□□□□□ -1.37
VPS52-222ENST00000495981 TSC1Q92574 1164 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms