RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 NBPF10Q6P3W6 841 aaKnown RBP6.75□□□□□ -1.33
DEPDC1-204ENST00000489862 NBPF15Q8N660 670 aa6.75□□□□□ -1.33
DEPDC1-204ENST00000489862 ATXN7L1Q9ULK2 861 aaPredicted RBP6.75□□□□□ -1.33
DEPDC1-204ENST00000489862 PCDHB15Q9Y5E8 787 aa6.75□□□□□ -1.33
DEPDC1-204ENST00000489862 MEN1O00255 615 aa6.74□□□□□ -1.33
DEPDC1-204ENST00000489862 ARAFP10398 606 aa6.74□□□□□ -1.33
DEPDC1-204ENST00000489862 NLRP3Q96P20 1036 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 SPATA31C2B4DYI2 1134 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 ATP5J2-PTCD1G3V325 749 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 IRAK1P51617 712 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 CSPP1Q1MSJ5 1256 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 TRIM11Q96F44 468 aa6.72□□□□□ -1.33
DEPDC1-204ENST00000489862 RAB15P59190 212 aa6.71□□□□□ -1.34
DEPDC1-204ENST00000489862 MYSM1Q5VVJ2 828 aa6.71□□□□□ -1.34
DEPDC1-204ENST00000489862 TAS1R3Q7RTX0 852 aa6.71□□□□□ -1.34
DEPDC1-204ENST00000489862 NEURL1BA8MQ27 555 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 ERVH48-1M5A8F1 160 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 FGFR3P22607 806 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 HELBQ8NG08 1087 aaPredicted RBP6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 CABLES1Q8TDN4 633 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 LIMD1Q9UGP4 676 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 RNF114Q9Y508 228 aa6.7□□□□□ -1.34
DEPDC1-204ENST00000489862 C2CD2LO14523 706 aa6.69□□□□□ -1.34
DEPDC1-204ENST00000489862 CSB-PGBD3P0DP91 1061 aa6.69□□□□□ -1.34
DEPDC1-204ENST00000489862 PGBD3Q8N328 593 aa6.69□□□□□ -1.34
DEPDC1-204ENST00000489862 GPBP1L1Q9HC44 474 aaPredicted RBP6.69□□□□□ -1.34
DEPDC1-204ENST00000489862 WASLO00401 505 aaPredicted RBP6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 GRIP2Q9C0E4 1043 aa6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 PRKCSHP14314 528 aaPredicted RBP6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 QPCTQ16769 361 aa6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 EFHC2Q5JST6 749 aa6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 KRTAP4-11Q9BYQ6 195 aa6.68□□□□□ -1.34
DEPDC1-204ENST00000489862 A0A1W2PRU2 124 aa6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 NUTM2BA6NNL0 878 aaPredicted RBP6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 NUTM2EB1AL46 878 aaPredicted RBP6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 PTK2Q05397 1052 aa6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 NUTM2DQ5VT03 806 aaPredicted RBP6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 NUTM2AQ8IVF1 878 aaPredicted RBP6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 POLR3EQ9NVU0 708 aa6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 RNF112Q9ULX5 631 aa6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 ZC3H4Q9UPT8 1303 aaKnown RBP6.67□□□□□ -1.34
DEPDC1-204ENST00000489862 THBS1P07996 1170 aa6.66□□□□□ -1.34
DEPDC1-204ENST00000489862 ADH6P28332 368 aa6.66□□□□□ -1.34
DEPDC1-204ENST00000489862 KDM4CQ9H3R0 1056 aa6.66□□□□□ -1.34
DEPDC1-204ENST00000489862 GPAMQ9HCL2 828 aa6.66□□□□□ -1.34
DEPDC1-204ENST00000489862 CYLDQ9NQC7 956 aa6.66□□□□□ -1.34
DEPDC1-204ENST00000489862 A0A1B0GTH6 734 aa6.65□□□□□ -1.34
DEPDC1-204ENST00000489862 CTBSQ01459 385 aa6.65□□□□□ -1.34
DEPDC1-204ENST00000489862 LILRB3O75022 631 aa6.65□□□□□ -1.35
DEPDC1-204ENST00000489862 CLK2P49760 499 aaKnown RBP6.65□□□□□ -1.35
DEPDC1-204ENST00000489862 FAM117AQ9C073 453 aa6.65□□□□□ -1.35
DEPDC1-204ENST00000489862 PCMTD2Q9NV79 361 aa6.65□□□□□ -1.35
DEPDC1-204ENST00000489862 TUSC1Q2TAM9 212 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 RTL5Q5HYW3 569 aaPredicted RBP6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 ABHD17AQ96GS6 310 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 KRTAP4-5Q9BYR2 181 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 RSPH6AQ9H0K4 717 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 AVENQ9NQS1 362 aaPredicted RBP6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 FKBPLQ9UIM3 349 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 GPSM3Q9Y4H4 160 aa6.64□□□□□ -1.35
DEPDC1-204ENST00000489862 C9orf172C9J069 976 aa6.63□□□□□ -1.35
DEPDC1-204ENST00000489862 TRIM28Q13263 835 aaKnown RBP6.63□□□□□ -1.35
DEPDC1-204ENST00000489862 UBAP2LQ14157 1087 aaKnown RBP6.63□□□□□ -1.35
DEPDC1-204ENST00000489862 SEPT12Q8IYM1 358 aa6.63□□□□□ -1.35
DEPDC1-204ENST00000489862 TAL1P17542 331 aaPredicted RBP6.62□□□□□ -1.35
DEPDC1-204ENST00000489862 PPP2R2DQ66LE6 453 aa6.62□□□□□ -1.35
DEPDC1-204ENST00000489862 DZIP3Q86Y13 1208 aaKnown RBP6.62□□□□□ -1.35
DEPDC1-204ENST00000489862 ADAM32Q8TC27 787 aa6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 KRTAP17-1Q9BYP8 105 aa6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 CLN3Q13286 438 aa6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 FBXO31Q5XUX0 539 aaPredicted RBP6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 PROCA1Q8NCQ7 364 aaPredicted RBP6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 NDFIP2Q9NV92 336 aa6.61□□□□□ -1.35
DEPDC1-204ENST00000489862 ESPNB1AK53 854 aa6.6□□□□□ -1.35
DEPDC1-204ENST00000489862 BNIP3LO60238 219 aa6.6□□□□□ -1.35
DEPDC1-204ENST00000489862 SKIV2LQ15477 1246 aaKnown RBP6.6□□□□□ -1.35
DEPDC1-204ENST00000489862 FIGNL1Q6PIW4 674 aa6.6□□□□□ -1.35
DEPDC1-204ENST00000489862 DDRGK1Q96HY6 314 aa6.6□□□□□ -1.35
DEPDC1-204ENST00000489862 JAG1P78504 1218 aa6.59□□□□□ -1.35
DEPDC1-204ENST00000489862 ATP1B4Q9UN42 357 aaPredicted RBP6.59□□□□□ -1.35
DEPDC1-204ENST00000489862 ALAS2P22557 587 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 GTF2E1P29083 439 aaPredicted RBP6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 SH3D19Q5HYK7 790 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 CCDC125Q86Z20 511 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 RUBCNLQ9H714 662 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 CTDSPL2Q05D32 466 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 CYP2U1Q7Z449 544 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 TP53INP1Q96A56 240 aa6.58□□□□□ -1.36
DEPDC1-204ENST00000489862 ADGRE1Q14246 886 aa6.57□□□□□ -1.36
DEPDC1-204ENST00000489862 TXNRD3Q86VQ6 643 aa6.57□□□□□ -1.36
DEPDC1-204ENST00000489862 FCHSD1Q86WN1 690 aa6.57□□□□□ -1.36
DEPDC1-204ENST00000489862 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.57□□□□□ -1.36
DEPDC1-204ENST00000489862 NEUROD2Q15784 382 aa6.56□□□□□ -1.36
DEPDC1-204ENST00000489862 NRG1Q02297 640 aaPredicted RBP6.55□□□□□ -1.36
DEPDC1-204ENST00000489862 GNASQ5JWF2 1037 aa6.55□□□□□ -1.36
DEPDC1-204ENST00000489862 FAM182BQ5T319 152 aa6.55□□□□□ -1.36
DEPDC1-204ENST00000489862 FAM229AH3BQW9 127 aa6.54□□□□□ -1.36
DEPDC1-204ENST00000489862 PHKA2P46019 1235 aa6.54□□□□□ -1.36
DEPDC1-204ENST00000489862 GRIK4Q16099 956 aa6.54□□□□□ -1.36
DEPDC1-204ENST00000489862 TPRNQ4KMQ1 711 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms