RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	ELL2	O00472	640 aa	Predicted RBP	13.71	□□□□□ -0.21
ITSN1-231	ENST00000489261	ZBTB7B	O15156	539 aa	Predicted RBP	13.71	□□□□□ -0.21
ITSN1-231	ENST00000489261	NBPF6	Q5VWK0	638 aa		13.71	□□□□□ -0.21
ITSN1-231	ENST00000489261	NBPF4	Q96M43	638 aa		13.71	□□□□□ -0.21
ITSN1-231	ENST00000489261	NCAPD2	Q15021	1401 aa		13.71	□□□□□ -0.22
ITSN1-231	ENST00000489261	LTN1	O94822	1766 aa		13.71	□□□□□ -0.22
ITSN1-231	ENST00000489261	COL18A1	P39060	1754 aa		13.71	□□□□□ -0.22
ITSN1-231	ENST00000489261	CPD	O75976	1380 aa		13.71	□□□□□ -0.22
ITSN1-231	ENST00000489261	ONECUT3	O60422	494 aa	Predicted RBP	13.7	□□□□□ -0.22
ITSN1-231	ENST00000489261	AKAP4	Q5JQC9	854 aa		13.7	□□□□□ -0.22
ITSN1-231	ENST00000489261	ANKRD24	Q8TF21	1146 aa		13.7	□□□□□ -0.22
ITSN1-231	ENST00000489261	BTG4	Q9NY30	223 aa		13.7	□□□□□ -0.22
ITSN1-231	ENST00000489261	INTS3	Q68E01	1043 aa	Known RBP	13.69	□□□□□ -0.22
ITSN1-231	ENST00000489261	IL17RE	Q8NFR9	667 aa		13.69	□□□□□ -0.22
ITSN1-231	ENST00000489261	PRDM11	Q9NQV5	511 aa		13.69	□□□□□ -0.22
ITSN1-231	ENST00000489261	EP400	Q96L91	3159 aa		13.69	□□□□□ -0.22
ITSN1-231	ENST00000489261	CAMTA1	Q9Y6Y1	1673 aa		13.69	□□□□□ -0.22
ITSN1-231	ENST00000489261	RGPD5	Q99666	1765 aa		13.68	□□□□□ -0.22
ITSN1-231	ENST00000489261	CCDC30	Q5VVM6	783 aa		13.68	□□□□□ -0.22
ITSN1-231	ENST00000489261	SMC5	Q8IY18	1101 aa		13.68	□□□□□ -0.22
ITSN1-231	ENST00000489261	PDZRN3	Q9UPQ7	1066 aa		13.68	□□□□□ -0.22
ITSN1-231	ENST00000489261	ABCC6	O95255	1503 aa		13.68	□□□□□ -0.22
ITSN1-231	ENST00000489261	WNK3	Q9BYP7	1800 aa		13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	HOXB7	P09629	217 aa		13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	ZC3H6	P61129	1189 aa	Known RBP	13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	GCC1	Q96CN9	775 aa		13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	STK31	Q9BXU1	1019 aa		13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	CEMIP	Q8WUJ3	1361 aa		13.67	□□□□□ -0.22
ITSN1-231	ENST00000489261	SPATA31A5	Q5VU36	1347 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	SPATA31A7	Q8IWB4	1347 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	OVOS2	A0A0G2JMS6	1433 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	ZBTB7C	A1YPR0	619 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	RGS3	P49796	1198 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	CHRNA2	Q15822	529 aa		13.66	□□□□□ -0.22
ITSN1-231	ENST00000489261	LRRC37A3	O60309	1634 aa		13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	SLC4A2	P04920	1241 aa		13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	C1orf141	Q5JVX7	400 aa		13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	SEPT12	Q8IYM1	358 aa		13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	IPO9	Q96P70	1041 aa	Known RBP	13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
ITSN1-231	ENST00000489261	COL5A2	P05997	1499 aa	Predicted RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	CCT4	P50991	539 aa	Known RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	USHBP1	Q8N6Y0	703 aa		13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	DDRGK1	Q96HY6	314 aa		13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	MIS18A	Q9NYP9	233 aa		13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	CCDC9	Q9Y3X0	531 aa	Known RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	PARP4	Q9UKK3	1724 aa	Known RBP	13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	SPATA31A1	Q5TZJ5	1347 aa		13.64	□□□□□ -0.23
ITSN1-231	ENST00000489261	ERBB3	P21860	1342 aa		13.63	□□□□□ -0.23
ITSN1-231	ENST00000489261	RNMT	O43148	476 aa	Known RBP	13.62	□□□□□ -0.23
ITSN1-231	ENST00000489261	TEF	Q10587	303 aa		13.62	□□□□□ -0.23
ITSN1-231	ENST00000489261	KRT24	Q2M2I5	525 aa		13.62	□□□□□ -0.23
ITSN1-231	ENST00000489261	C8orf34	Q49A92	452 aa		13.62	□□□□□ -0.23
ITSN1-231	ENST00000489261	AXIN2	Q9Y2T1	843 aa		13.62	□□□□□ -0.23
ITSN1-231	ENST00000489261	TAT	P17735	454 aa	Predicted RBP	13.61	□□□□□ -0.23
ITSN1-231	ENST00000489261	NUCB1	Q02818	461 aa		13.61	□□□□□ -0.23
ITSN1-231	ENST00000489261	FAM98C	Q17RN3	349 aa	Known RBP	13.61	□□□□□ -0.23
ITSN1-231	ENST00000489261	RAPGEF4	Q8WZA2	1011 aa		13.61	□□□□□ -0.23
ITSN1-231	ENST00000489261	SPG7	Q9UQ90	795 aa		13.61	□□□□□ -0.23
ITSN1-231	ENST00000489261	EIF4A1	P60842	406 aa	Known RBP	13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	ERICH6	Q7L0X2	663 aa		13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	SKAP1	Q86WV1	359 aa		13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	CCDC125	Q86Z20	511 aa		13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	TNS1	Q9HBL0	1735 aa	Known RBP	13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.6	□□□□□ -0.23
ITSN1-231	ENST00000489261	BTBD11	A6QL63	1104 aa		13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	EIF5B	O60841	1220 aa	Known RBP	13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	HSP90AB1	P08238	724 aa	Known RBP	13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	KRT27	Q7Z3Y8	459 aa		13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	LGR6	Q9HBX8	967 aa		13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	STRN4	Q9NRL3	753 aa		13.59	□□□□□ -0.23
ITSN1-231	ENST00000489261	LARP1	Q6PKG0	1096 aa	Known RBP	13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	BARGIN	Q6ZT62	677 aa		13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	CHD1L	Q86WJ1	897 aa		13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	ANKRD44	Q8N8A2	993 aa		13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	NLRP2	Q9NX02	1062 aa		13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	CACNA1F	O60840	1977 aa		13.58	□□□□□ -0.24
ITSN1-231	ENST00000489261	MSH5	O43196	834 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	HMMR	O75330	724 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	GNAI3	P08754	354 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	CSB-PGBD3	P0DP91	1061 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	EVA1C	P58658	441 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	FLII	Q13045	1269 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	DCTPP1	Q9H773	170 aa		13.57	□□□□□ -0.24
ITSN1-231	ENST00000489261	FAM208A	Q9UK61	1670 aa	Known RBP	13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	HDGFL1	Q5TGJ6	251 aa		13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	IFNL2	Q8IZJ0	200 aa		13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	UPF2	Q9HAU5	1272 aa	Known RBP	13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	THRAP3	Q9Y2W1	955 aa	Known RBP	13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	NOP58	Q9Y2X3	529 aa	Known RBP	13.56	□□□□□ -0.24
ITSN1-231	ENST00000489261	SBF2	Q86WG5	1849 aa		13.55	□□□□□ -0.24
ITSN1-231	ENST00000489261		A0A0G2JS52	829 aa		13.55	□□□□□ -0.24
ITSN1-231	ENST00000489261	MYT1	Q01538	1121 aa		13.55	□□□□□ -0.24
ITSN1-231	ENST00000489261	MPRIP	Q6WCQ1	1025 aa		13.55	□□□□□ -0.24
ITSN1-231	ENST00000489261	G2E3	Q7L622	706 aa		13.55	□□□□□ -0.24
ITSN1-231	ENST00000489261	FKBP5	Q13451	457 aa	Predicted RBP	13.54	□□□□□ -0.24
ITSN1-231	ENST00000489261	ANKRD45	Q5TZF3	282 aa		13.54	□□□□□ -0.24
ITSN1-231	ENST00000489261	SIRT2	Q8IXJ6	389 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms