RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ERVK-9P63128 1117 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 SH3BP2P78314 561 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 LINC01559Q495D7 138 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 PRIMPOLQ96LW4 560 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 KCTD15Q96SI1 283 aaPredicted RBP6.48□□□□□ -1.37
HMGB3-203ENST00000430118 HINFPQ9BQA5 517 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 PRDM2Q13029 1718 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 S1PR4O95977 384 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 DHX9Q08211 1270 aaKnown RBP6.47□□□□□ -1.37
HMGB3-203ENST00000430118 MPNDQ8N594 471 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 HELQQ8TDG4 1101 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 GIPC2Q8TF65 315 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 GTF3C2Q8WUA4 911 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-203ENST00000430118 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.47□□□□□ -1.37
HMGB3-203ENST00000430118 KIAA1522Q9P206 1035 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-203ENST00000430118 ABCC8Q09428 1581 aa6.47□□□□□ -1.37
HMGB3-203ENST00000430118 CHD1O14646 1710 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 ZBTB24O43167 697 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-203ENST00000430118 FAM13AO94988 1023 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 FGD1P98174 961 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 FKBP5Q13451 457 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-203ENST00000430118 CC2D2BQ6DHV5 1058 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 RGL4Q8IZJ4 473 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 TSEN2Q8NCE0 465 aaKnown RBP6.46□□□□□ -1.38
HMGB3-203ENST00000430118 ZNF516Q92618 1163 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 ESF1Q9H501 851 aaKnown RBP6.46□□□□□ -1.38
HMGB3-203ENST00000430118 ZNF358Q9NW07 568 aa6.46□□□□□ -1.38
HMGB3-203ENST00000430118 ZNF608Q9ULD9 1512 aaPredicted RBP6.45□□□□□ -1.38
HMGB3-203ENST00000430118 MAPK1P28482 360 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 ITGAEP38570 1179 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 ARHGAP4P98171 946 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 KCNC4Q03721 635 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 ZNF211Q13398 564 aaPredicted RBP6.45□□□□□ -1.38
HMGB3-203ENST00000430118 ECM1Q16610 540 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 INTS6LQ5JSJ4 861 aaKnown RBP6.45□□□□□ -1.38
HMGB3-203ENST00000430118 FBXO33Q7Z6M2 555 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 STAG2Q8N3U4 1231 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 CDK15Q96Q40 435 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 CITED4Q96RK1 184 aa6.45□□□□□ -1.38
HMGB3-203ENST00000430118 IRX2Q9BZI1 471 aaPredicted RBP6.45□□□□□ -1.38
HMGB3-203ENST00000430118 DNMT3AQ9Y6K1 912 aaPredicted RBP6.45□□□□□ -1.38
HMGB3-203ENST00000430118 TMEM229AB2RXF0 380 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 TCF3P15923 654 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 GGCXP38435 758 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 RPIAP49247 311 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 TRIM32Q13049 653 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 VASH1Q7L8A9 365 aaPredicted RBP6.44□□□□□ -1.38
HMGB3-203ENST00000430118 ANKLE1Q8NAG6 615 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 RBCK1Q9BYM8 510 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 WIZO95785 1651 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 SYNJ1O43426 1573 aa6.44□□□□□ -1.38
HMGB3-203ENST00000430118 ERVH48-1M5A8F1 160 aa6.43□□□□□ -1.38
HMGB3-203ENST00000430118 IGSF3O75054 1194 aa6.43□□□□□ -1.38
HMGB3-203ENST00000430118 SCNN1AP37088 669 aa6.43□□□□□ -1.38
HMGB3-203ENST00000430118 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.43□□□□□ -1.38
HMGB3-203ENST00000430118 SLC4A9Q96Q91 983 aa6.43□□□□□ -1.38
HMGB3-203ENST00000430118 SEPT3Q9UH03 358 aa6.43□□□□□ -1.38
HMGB3-203ENST00000430118 GNRH1P01148 92 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 INHAP05111 366 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 SCNN1DP51172 638 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 EPHA4P54764 986 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 GDF10P55107 478 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 ESCO1Q5FWF5 840 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 ALKBH2Q6NS38 261 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 CYP2U1Q7Z449 544 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 C8orf37Q96NL8 207 aa6.42□□□□□ -1.38
HMGB3-203ENST00000430118 TOP2AP11388 1531 aaKnown RBP6.41□□□□□ -1.38
HMGB3-203ENST00000430118 TOPBP1Q92547 1522 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 WDR97A6NE52 1622 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 NDUFB5O43674 189 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 VTI1AQ96AJ9 217 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 MKNK1Q9BUB5 465 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 OSBPL3Q9H4L5 887 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 ATAD2Q6PL18 1390 aa6.41□□□□□ -1.38
HMGB3-203ENST00000430118 DNMBPQ6XZF7 1577 aa6.4□□□□□ -1.38
HMGB3-203ENST00000430118 SCTRP47872 440 aa6.4□□□□□ -1.38
HMGB3-203ENST00000430118 MTFR1Q15390 333 aa6.4□□□□□ -1.38
HMGB3-203ENST00000430118 EAPPQ56P03 285 aaPredicted RBP6.4□□□□□ -1.38
HMGB3-203ENST00000430118 C16orf46Q6P387 395 aa6.4□□□□□ -1.38
HMGB3-203ENST00000430118 SCG3Q8WXD2 468 aaKnown RBP6.4□□□□□ -1.38
HMGB3-203ENST00000430118 ANO2Q9NQ90 1003 aa6.4□□□□□ -1.38
HMGB3-203ENST00000430118 FOXK2Q01167 660 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 MYT1Q01538 1121 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 NR5A1Q13285 461 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 POTEAQ6S8J7 498 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 EHBP1Q8NDI1 1231 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 NKX2-3Q8TAU0 364 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 DMRTB1Q96MA1 342 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 CLASP1Q7Z460 1538 aa6.39□□□□□ -1.39
HMGB3-203ENST00000430118 RNF223E7ERA6 249 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 PSMA6P60900 246 aaKnown RBP6.38□□□□□ -1.39
HMGB3-203ENST00000430118 SKOR1P84550 965 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 FMR1Q06787 632 aaKnown RBP eCLIP6.38□□□□□ -1.39
HMGB3-203ENST00000430118 NBPF15Q8N660 670 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 ABTB2Q8N961 1025 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 MYO19Q96H55 970 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 PURBQ96QR8 312 aaKnown RBP6.38□□□□□ -1.39
HMGB3-203ENST00000430118 ETNK1Q9HBU6 452 aa6.38□□□□□ -1.39
HMGB3-203ENST00000430118 SCHIP1Q9P0W5 487 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-203ENST00000430118 CHMP3Q9Y3E7 222 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms