RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 ADAMTS12P58397 1594 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 BMP2KLQ5H9B9 411 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 LARP1BQ659C4 914 aaKnown RBP18.91■□□□□ 0.62
NPHP3-201ENST00000337331 CEP135Q66GS9 1140 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 CWC27Q6UX04 472 aaKnown RBP18.91■□□□□ 0.62
NPHP3-201ENST00000337331 FAM177A1Q8N128 213 aaPredicted RBP18.91■□□□□ 0.62
NPHP3-201ENST00000337331 CCDC47Q96A33 483 aaKnown RBP18.91■□□□□ 0.62
NPHP3-201ENST00000337331 CHAMP1Q96JM3 812 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 TMEM51Q9NW97 253 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 PAXBP1Q9Y5B6 917 aa18.91■□□□□ 0.62
NPHP3-201ENST00000337331 H0YHG0 523 aa18.9■□□□□ 0.62
NPHP3-201ENST00000337331 SMARCA5O60264 1052 aaPredicted RBP18.9■□□□□ 0.62
NPHP3-201ENST00000337331 DISP3Q9P2K9 1392 aa18.9■□□□□ 0.62
NPHP3-201ENST00000337331 LMAN1P49257 510 aa18.9■□□□□ 0.62
NPHP3-201ENST00000337331 KRT85P78386 507 aa18.9■□□□□ 0.62
NPHP3-201ENST00000337331 IRX5P78411 483 aaPredicted RBP18.9■□□□□ 0.62
NPHP3-201ENST00000337331 ZNF397Q8NF99 534 aaPredicted RBP18.89■□□□□ 0.62
NPHP3-201ENST00000337331 CCDC191Q8NCU4 936 aa18.89■□□□□ 0.61
NPHP3-201ENST00000337331 ALDH1L2Q3SY69 923 aa18.89■□□□□ 0.61
NPHP3-201ENST00000337331 CCDC70Q6NSX1 233 aa18.89■□□□□ 0.61
NPHP3-201ENST00000337331 BLOC1S2Q6QNY1 142 aa18.89■□□□□ 0.61
NPHP3-201ENST00000337331 TNMDQ9H2S6 317 aa18.89■□□□□ 0.61
NPHP3-201ENST00000337331 PTGS1P23219 599 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 FYB1O15117 783 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 STK38Q15208 465 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 OLFM4Q6UX06 510 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 PDILTQ8N807 584 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 EMILIN1Q9Y6C2 1016 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 PARD3Q8TEW0 1356 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 AACSQ86V21 672 aa18.88■□□□□ 0.61
NPHP3-201ENST00000337331 JAKMIP1Q96N16 626 aaKnown RBP18.88■□□□□ 0.61
NPHP3-201ENST00000337331 NME9Q86XW9 330 aa18.87■□□□□ 0.61
NPHP3-201ENST00000337331 NUTM1Q86Y26 1132 aa18.87■□□□□ 0.61
NPHP3-201ENST00000337331 ABCC11Q96J66 1382 aa18.87■□□□□ 0.61
NPHP3-201ENST00000337331 MYL6BP14649 208 aa18.87■□□□□ 0.61
NPHP3-201ENST00000337331 ABCA5Q8WWZ7 1642 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 SMC2O95347 1197 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 SMTNL1A8MU46 457 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 TTLL5Q6EMB2 1281 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 TXLNBQ8N3L3 684 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 TBC1D2BQ9UPU7 963 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 PKP1Q13835 747 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 CLIP2Q9UDT6 1046 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 CKAP2LQ8IYA6 745 aa18.86■□□□□ 0.61
NPHP3-201ENST00000337331 TATP17735 454 aaPredicted RBP18.85■□□□□ 0.61
NPHP3-201ENST00000337331 ANKRD1Q15327 319 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 HSP90AB3PQ58FF7 597 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 THEMISQ8N1K5 641 aaPredicted RBP18.85■□□□□ 0.61
NPHP3-201ENST00000337331 F6X3S4 739 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 NUP62CLQ9H1M0 184 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 TARBP1Q13395 1621 aaKnown RBP18.85■□□□□ 0.61
NPHP3-201ENST00000337331 IBSPP21815 317 aaPredicted RBP18.85■□□□□ 0.61
NPHP3-201ENST00000337331 KRBA2Q6ZNG9 492 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 USP48Q86UV5 1035 aa18.85■□□□□ 0.61
NPHP3-201ENST00000337331 PROSER2Q86WR7 435 aaPredicted RBP18.85■□□□□ 0.61
NPHP3-201ENST00000337331 ME1P48163 572 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 RDXP35241 583 aaKnown RBP18.84■□□□□ 0.61
NPHP3-201ENST00000337331 IDI1Q13907 227 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 ZNF396Q96N95 335 aaPredicted RBP18.84■□□□□ 0.61
NPHP3-201ENST00000337331 PDRG1Q9NUG6 133 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 LRRFIP2Q9Y608 721 aaKnown RBP18.84■□□□□ 0.61
NPHP3-201ENST00000337331 MX1P20591 662 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 CALRP27797 417 aaKnown RBP18.84■□□□□ 0.61
NPHP3-201ENST00000337331 MAP3K11Q16584 847 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 RRP12Q5JTH9 1297 aaKnown RBP18.84■□□□□ 0.61
NPHP3-201ENST00000337331 DRC1Q96MC2 740 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 MTMR7Q9Y216 660 aa18.84■□□□□ 0.61
NPHP3-201ENST00000337331 SART3Q15020 963 aaKnown RBP18.83■□□□□ 0.61
NPHP3-201ENST00000337331 FERMT3Q86UX7 667 aa18.83■□□□□ 0.61
NPHP3-201ENST00000337331 GPT2Q8TD30 523 aa18.83■□□□□ 0.6
NPHP3-201ENST00000337331 XBP1P17861 261 aa18.82■□□□□ 0.6
NPHP3-201ENST00000337331 CD2BP2O95400 341 aaKnown RBP18.82■□□□□ 0.6
NPHP3-201ENST00000337331 DMRT2Q9Y5R5 561 aa18.82■□□□□ 0.6
NPHP3-201ENST00000337331 CCDC158Q5M9N0 1113 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 BTBD11A6QL63 1104 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 GNAT3A8MTJ3 354 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 HDAC1Q13547 482 aaPredicted RBP18.81■□□□□ 0.6
NPHP3-201ENST00000337331 PER1O15534 1290 aaPredicted RBP18.81■□□□□ 0.6
NPHP3-201ENST00000337331 NUCB1Q02818 461 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 URI1O94763 535 aaPredicted RBP18.81■□□□□ 0.6
NPHP3-201ENST00000337331 KIF1BPQ96EK5 621 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 TMX3Q96JJ7 454 aa18.81■□□□□ 0.6
NPHP3-201ENST00000337331 CTR9Q6PD62 1173 aa18.8■□□□□ 0.6
NPHP3-201ENST00000337331 SPATA32Q96LK8 384 aa18.8■□□□□ 0.6
NPHP3-201ENST00000337331 SCAF11Q99590 1463 aaKnown RBP18.8■□□□□ 0.6
NPHP3-201ENST00000337331 PBRM1Q86U86 1689 aa18.8■□□□□ 0.6
NPHP3-201ENST00000337331 CASTP20810 708 aaKnown RBP18.8■□□□□ 0.6
NPHP3-201ENST00000337331 ZSCAN31Q96LW9 406 aaPredicted RBP18.8■□□□□ 0.6
NPHP3-201ENST00000337331 MNAT1P51948 309 aa18.8■□□□□ 0.6
NPHP3-201ENST00000337331 LARP6Q9BRS8 491 aaKnown RBP18.8■□□□□ 0.6
NPHP3-201ENST00000337331 BRMS1Q9HCU9 246 aa18.8■□□□□ 0.6
NPHP3-201ENST00000337331 CNNM1Q9NRU3 951 aa18.79■□□□□ 0.6
NPHP3-201ENST00000337331 DHX37Q8IY37 1157 aaKnown RBP18.79■□□□□ 0.6
NPHP3-201ENST00000337331 DDX54Q8TDD1 881 aaKnown RBP18.79■□□□□ 0.6
NPHP3-201ENST00000337331 ELF2Q15723 593 aa18.79■□□□□ 0.6
NPHP3-201ENST00000337331 CLGNO14967 610 aa18.79■□□□□ 0.6
NPHP3-201ENST00000337331 CABP4P57796 275 aa18.79■□□□□ 0.6
NPHP3-201ENST00000337331 FKBP4Q02790 459 aaKnown RBP eCLIP18.79■□□□□ 0.6
NPHP3-201ENST00000337331 CTTNBP2Q8WZ74 1663 aa18.78■□□□□ 0.6
NPHP3-201ENST00000337331 CCDC102AQ96A19 550 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms