RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TRIM6-TRIM34B2RNG4 842 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 ZNF500O60304 480 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 SHTN1A0MZ66 631 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 NBPF7P0C2Y1 421 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 TMEM87AQ8NBN3 555 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 RUSC2Q8N2Y8 1516 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 HSP90AB3PQ58FF7 597 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 SPC24Q8NBT2 197 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 HIRIP3Q9BW71 556 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 ANO10Q9NW15 660 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 PPP1R1BQ9UD71 204 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 MSH5O43196 834 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 PPP2R1AP30153 589 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 CC2D1BQ5T0F9 858 aaKnown RBP6.13□□□□□ -1.43
SCN1A-201ENST00000303395 CEP63Q96MT8 703 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 IFT57Q9NWB7 429 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 STIM1Q13586 685 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 VPS37DQ86XT2 251 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 UBXN4Q92575 508 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 ATP10AO60312 1499 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 MAP3K11Q16584 847 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 NPHP3Q7Z494 1330 aa6.13□□□□□ -1.43
SCN1A-201ENST00000303395 CDK13Q14004 1512 aaKnown RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 SEPT10Q9P0V9 454 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 ZNF526Q8TF50 670 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 CLGNO14967 610 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 UBE2HP62256 183 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 ZSCAN25Q6NSZ9 544 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 POTEDQ86YR6 584 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 ZNF710Q8N1W2 664 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 SFPQP23246 707 aaKnown RBP eCLIP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 STMN4Q9H169 189 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 TXLNAP40222 546 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 SEMA3FQ13275 785 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 CCDC91Q7Z6B0 441 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 CEP131Q9UPN4 1083 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 ARAP3Q8WWN8 1544 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 CKAP4Q07065 602 aaKnown RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 SART3Q15020 963 aaKnown RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 PHF23Q9BUL5 403 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-201ENST00000303395 TTC21BQ7Z4L5 1316 aa6.12□□□□□ -1.43
SCN1A-201ENST00000303395 KDM5BQ9UGL1 1544 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 UQCRHLA0A096LP55 91 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 UQCRHP07919 91 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 RBM27Q9P2N5 1060 aaKnown RBP6.11□□□□□ -1.43
SCN1A-201ENST00000303395 U3KPZ7 1027 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-201ENST00000303395 SPRYD3Q8NCJ5 442 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 SYNMO15061 1565 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 FGFR1OPO95684 399 aaKnown RBP6.11□□□□□ -1.43
SCN1A-201ENST00000303395 TRDNQ13061 729 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 ARMC9Q7Z3E5 817 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 C10orf67Q8IYJ2 551 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 NAA15Q9BXJ9 866 aaKnown RBP6.11□□□□□ -1.43
SCN1A-201ENST00000303395 SOGA3Q5TF21 947 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 LRSAM1Q6UWE0 723 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 CTAGE1Q96RT6 745 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 IGSF3O75054 1194 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 FAM200AQ8TCP9 573 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 EIF3DO15371 548 aaKnown RBP eCLIP6.11□□□□□ -1.433e-6■■□□□ 11.9
SCN1A-201ENST00000303395 ZNF397Q8NF99 534 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-201ENST00000303395 NEURL4Q96JN8 1562 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 RAPGEF6Q8TEU7 1601 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 SMC2O95347 1197 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 FCHSD1Q86WN1 690 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 COG3Q96JB2 828 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 IMPACTQ9P2X3 320 aa6.11□□□□□ -1.43
SCN1A-201ENST00000303395 BRPF1P55201 1214 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 APLFQ8IW19 511 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 SLFNL1Q499Z3 407 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 ANKRD24Q8TF21 1146 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 NUP62CLQ9H1M0 184 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 CYP46A1Q9Y6A2 500 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 ABCC5O15440 1437 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 APBA1Q02410 837 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 GIGYF2Q6Y7W6 1299 aaKnown RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 RUBCNQ92622 972 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 ERICH2A1L162 156 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 CCDC30Q5VVM6 783 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 SUDS3Q9H7L9 328 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PRAG1Q86YV5 1406 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PPP2R5EQ16537 467 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PPP4R3BQ5MIZ7 849 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PPP1R9BQ96SB3 815 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 TRIM5Q9C035 493 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 ABCC1P33527 1531 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 ARHGAP5Q13017 1502 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 MYOM2P54296 1465 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PAK3O75914 559 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 SARNPP82979 210 aaKnown RBP6.1□□□□□ -1.43
SCN1A-201ENST00000303395 CHD1LQ86WJ1 897 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 CCDC148Q8NFR7 591 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 LRRC27Q9C0I9 530 aa6.1□□□□□ -1.43
SCN1A-201ENST00000303395 PABPN1LA6NDY0 278 aaKnown RBP6.09□□□□□ -1.43
SCN1A-201ENST00000303395 APOBRQ0VD83 1088 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 PTPN14Q15678 1187 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 CLEC17AQ6ZS10 378 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 CPLX1O14810 134 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 RAB3GAP1Q15042 981 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 CCDC196A0A1B0GTZ2 297 aa6.09□□□□□ -1.43
SCN1A-201ENST00000303395 BICD2Q8TD16 824 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms