RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Paxip1Q6NZQ4 1056 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Fam13bQ8K2H3 851 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Olfml1Q8BSH2 233 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 ScaperF8VQ70 1398 aaKnown RBP18.46■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Ccdc34Q3UI66 367 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Zap70P43404 618 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Gjb2Q00977 226 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 GpkowQ56A08 488 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Hook1Q8BIL5 728 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Krt82Q99M74 516 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Kif21bQ9QXL1 1668 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 KdrP35918 1367 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Cdc42bpaQ3UU96 1719 aa18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Rrs1Q9CYH6 365 aaKnown RBP18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Ipo7Q9EPL8 1038 aaKnown RBP18.45■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Rasa1E9PYG6 1038 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Nsd3Q6P2L6 1439 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Kif1bQ60575 1816 aaKnown RBP18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 CalcaP70160 136 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Aifm3Q3TY86 605 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Washc4Q3UMB9 1173 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Map3k2Q61083 619 aa18.44■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Irf9Q61179 399 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Cavin2Q63918 418 aaKnown RBP18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Mum1Q6DID5 682 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Odf2lQ9D478 642 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Gm10093D3YYI8 482 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Hdac1O09106 482 aaKnown RBP18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 EvcP57680 1005 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Bag4Q8CI61 457 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Tulp4Q9JIL5 1547 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Astn2Q80Z10 1352 aa18.43■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Trim34bJ3QNR8 485 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Anp32eP97822 260 aaKnown RBP18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Rbm5Q91YE7 815 aaKnown RBP18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Pdia3P27773 505 aaKnown RBP18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Gsdma2Q32M21 443 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Rapgef4Q9EQZ6 1011 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Setbp1Q9Z180 1582 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Samd1D3YXK1 519 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Hap1O35668 628 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 PdcQ9QW08 244 aa18.42■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Samm50Q8BGH2 469 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Trim34aQ99PP6 485 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Col17a1Q07563 1470 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 AnkarA2RT91 1465 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Eya1P97767 591 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 CenppQ9CZ92 286 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Zeb2Q9R0G7 1215 aa18.41■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Cdkn1cP49919 348 aa18.4■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Soga3Q6NZL0 945 aa18.4■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Dnajc10Q9DC23 793 aa18.4■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Aldh8a1Q8BH00 487 aa18.4■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Tpm4Q6IRU2 248 aa18.39■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Rbm28Q8CGC6 750 aaKnown RBP18.39■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Echdc1Q9D9V3 322 aa18.39■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Mapk8ip1Q9WVI9 707 aa18.39■□□□□ 0.54
Ccdc88b-201ENSMUST00000113440 Gabpb2P81069 414 aa18.39■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Il1rapl2Q9ERS6 686 aa18.39■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Bag3Q9JLV1 577 aaKnown RBP18.39■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Cyb5rlB1AS42 316 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Ubxn4Q8VCH8 506 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Irgm2A0A140LIF8 407 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Tubb6Q922F4 447 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Snap23O09044 210 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Ppm1fQ8CGA0 452 aa18.38■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Elp1Q7TT37 1333 aaKnown RBP18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Prl7d1P04769 244 aa18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Gtf2f1Q3THK3 508 aaKnown RBP18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Drc7Q6V3W6 876 aa18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Fsd1Q7TPM6 496 aa18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Erc1Q99MI1 1120 aa18.37■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Adgrl3Q80TS3 1537 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Nlrp3Q8R4B8 1033 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Uggt2E9Q4X2 1504 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Spty2d1Q68FG3 682 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 ImpactO55091 318 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Strn4P58404 760 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Atp8b2P98199 1209 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Cep57l1Q8VDS7 400 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Ftsj3Q9DBE9 838 aaKnown RBP18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 P2rx7Q9Z1M0 595 aa18.36■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Ddx58Q6Q899 926 aa18.35■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Amotl1Q9D4H4 968 aa18.35■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 TnmdQ9EP64 317 aa18.35■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Nucb1Q02819 459 aaKnown RBP18.35■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Synj2Q9D2G5 1434 aa18.35■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Wdr78E9PYY5 807 aa18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Nup88Q8CEC0 753 aaKnown RBP18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Zbtb22Q9Z0G7 638 aa18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Krt85Q9Z2T6 507 aa18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Myo3aQ8K3H5 1613 aa18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Vps53Q8CCB4 832 aa18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Nop14Q8R3N1 860 aaKnown RBP18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Ltv1Q6NSQ7 470 aaKnown RBP18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 NgdnQ9DB96 315 aaKnown RBP18.34■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Mctp1E9PV86 951 aa18.33■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Znhit6Q3UFB2 460 aaKnown RBP18.33■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Aldh1l2Q8K009 923 aa18.33■□□□□ 0.53
Ccdc88b-201ENSMUST00000113440 Stk38Q91VJ4 465 aa18.33■□□□□ 0.53
Retrieved 100 of 22,080 RNA–protein pairs in 30.8 ms