RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Trpm3Q5F4S9 1721 aa20.13■□□□□ 0.81
Shh-201ENSMUST00000002708 Rrp12Q6P5B0 1295 aaKnown RBP20.13■□□□□ 0.81
Shh-201ENSMUST00000002708 Zkscan1Q8BGS3 561 aaKnown RBP20.13■□□□□ 0.81
Shh-201ENSMUST00000002708 Irx6Q9ER75 438 aa20.13■□□□□ 0.81
Shh-201ENSMUST00000002708 Ahnak2E9PYB0 1738 aaKnown RBP20.13■□□□□ 0.81
Shh-201ENSMUST00000002708 PtmaP26350 111 aa20.12■□□□□ 0.81
Shh-201ENSMUST00000002708 Msh6P54276 1358 aaKnown RBP20.12■□□□□ 0.81
Shh-201ENSMUST00000002708 Cyp46a1Q9WVK8 500 aa20.12■□□□□ 0.81
Shh-201ENSMUST00000002708 HypkQ9CR41 129 aa20.11■□□□□ 0.81
Shh-201ENSMUST00000002708 Foxp4Q9DBY0 795 aaKnown RBP20.11■□□□□ 0.81
Shh-201ENSMUST00000002708 DmtnQ9WV69 405 aa20.11■□□□□ 0.81
Shh-201ENSMUST00000002708 Arfgef2A2A5R2 1792 aa20.11■□□□□ 0.81
Shh-201ENSMUST00000002708 Myo5bP21271 1818 aa20.1■□□□□ 0.81
Shh-201ENSMUST00000002708 Gadd45bP22339 160 aa20.1■□□□□ 0.81
Shh-201ENSMUST00000002708 MyclP10166 368 aa20.1■□□□□ 0.81
Shh-201ENSMUST00000002708 Rims2Q9EQZ7 1530 aa20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Igsf1Q7TQA1 1317 aa20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Chpf2Q3UU43 768 aa20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Rbm27Q5SFM8 1060 aaKnown RBP20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Srgap3Q812A2 1099 aa20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Erbb4Q61527 1308 aa20.09■□□□□ 0.81
Shh-201ENSMUST00000002708 Gnai2P08752 355 aaKnown RBP20.08■□□□□ 0.81
Shh-201ENSMUST00000002708 Cyp2d12Q8BVD2 504 aa20.08■□□□□ 0.81
Shh-201ENSMUST00000002708 Zkscan16A2ALW2 728 aa20.08■□□□□ 0.8
Shh-201ENSMUST00000002708 Ppp1r42Q8R1Z4 357 aa20.07■□□□□ 0.8
Shh-201ENSMUST00000002708 Tshz3Q8CGV9 1081 aa20.07■□□□□ 0.8
Shh-201ENSMUST00000002708 Rnf214Q8BFU3 668 aaKnown RBP20.06■□□□□ 0.8
Shh-201ENSMUST00000002708 Rbm10Q99KG3 930 aaKnown RBP20.06■□□□□ 0.8
Shh-201ENSMUST00000002708 Syce3B5KM66 88 aa20.06■□□□□ 0.8
Shh-201ENSMUST00000002708 4931400O07RikQ9D4M5 137 aa20.06■□□□□ 0.8
Shh-201ENSMUST00000002708 C3P01027 1663 aa20.06■□□□□ 0.8
Shh-201ENSMUST00000002708 Pank2Q3U4S0 443 aa20.05■□□□□ 0.8
Shh-201ENSMUST00000002708 Cpa2Q504N0 417 aa20.05■□□□□ 0.8
Shh-201ENSMUST00000002708 Amotl2Q8K371 772 aa20.05■□□□□ 0.8
Shh-201ENSMUST00000002708 Nphp1Q9QY53 687 aa20.05■□□□□ 0.8
Shh-201ENSMUST00000002708 GphnQ8BUV3 769 aaKnown RBP20.04■□□□□ 0.8
Shh-201ENSMUST00000002708 Phactr2B1AVP0 632 aa20.04■□□□□ 0.8
Shh-201ENSMUST00000002708 Erc2Q6PH08 957 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Disp3A3KFU9 1347 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Atf5O70191 283 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Hmox1P14901 289 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Cwc27Q3TKY6 469 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Ddrgk1Q80WW9 315 aa20.03■□□□□ 0.8
Shh-201ENSMUST00000002708 Elp1Q7TT37 1333 aaKnown RBP20.02■□□□□ 0.8
Shh-201ENSMUST00000002708 Pdia4P08003 638 aaKnown RBP20.02■□□□□ 0.79
Shh-201ENSMUST00000002708 Gsdma3Q5Y4Y6 464 aa20.02■□□□□ 0.79
Shh-201ENSMUST00000002708 Nol12Q8BG17 217 aa20.02■□□□□ 0.79
Shh-201ENSMUST00000002708 RestQ8VIG1 1082 aa20.02■□□□□ 0.79
Shh-201ENSMUST00000002708 Dlg5E9Q9R9 1921 aa20.01■□□□□ 0.79
Shh-201ENSMUST00000002708 ImpactO55091 318 aa20.01■□□□□ 0.79
Shh-201ENSMUST00000002708 Ano8Q6PB70 1060 aa20.01■□□□□ 0.79
Shh-201ENSMUST00000002708 Sipa1l2Q80TE4 1722 aa20.01■□□□□ 0.79
Shh-201ENSMUST00000002708 Mmp8O70138 465 aa20■□□□□ 0.79
Shh-201ENSMUST00000002708 Rad17Q6NXW6 688 aa20■□□□□ 0.79
Shh-201ENSMUST00000002708 TatQ8QZR1 454 aa20■□□□□ 0.79
Shh-201ENSMUST00000002708 Cyp2d11P24457 504 aa19.99■□□□□ 0.79
Shh-201ENSMUST00000002708 Atp8b2P98199 1209 aa19.99■□□□□ 0.79
Shh-201ENSMUST00000002708 Pnpla7A2AJ88 1352 aa19.99■□□□□ 0.79
Shh-201ENSMUST00000002708 NexnQ7TPW1 607 aa19.99■□□□□ 0.79
Shh-201ENSMUST00000002708 Ripk4Q9ERK0 786 aa19.99■□□□□ 0.79
Shh-201ENSMUST00000002708 Ptpdc1Q6NZK8 747 aa19.98■□□□□ 0.79
Shh-201ENSMUST00000002708 Zkscan2G3X952 960 aa19.98■□□□□ 0.79
Shh-201ENSMUST00000002708 Clcn1Q64347 994 aa19.98■□□□□ 0.79
Shh-201ENSMUST00000002708 Fyb1O35601 819 aa19.98■□□□□ 0.79
Shh-201ENSMUST00000002708 E4f1Q8CCE9 783 aa19.98■□□□□ 0.79
Shh-201ENSMUST00000002708 Col14a1Q80X19 1797 aa19.97■□□□□ 0.79
Shh-201ENSMUST00000002708 Hsp90b1P08113 802 aaKnown RBP19.97■□□□□ 0.79
Shh-201ENSMUST00000002708 Mum1Q6DID5 682 aa19.97■□□□□ 0.79
Shh-201ENSMUST00000002708 Stk36Q69ZM6 1316 aa19.96■□□□□ 0.79
Shh-201ENSMUST00000002708 Vwa3bJ9JI28 736 aa19.96■□□□□ 0.79
Shh-201ENSMUST00000002708 Arhgef1Q61210 920 aaKnown RBP19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Mrps27Q8BK72 415 aaKnown RBP19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 ScaperF8VQ70 1398 aaKnown RBP19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Zscan25B2RX31 543 aa19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Mknk2Q8CDB0 459 aa19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Amotl1Q9D4H4 968 aa19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Dnajc10Q9DC23 793 aa19.95■□□□□ 0.78
Shh-201ENSMUST00000002708 Sytl4Q9R0Q1 673 aa19.94■□□□□ 0.78
Shh-201ENSMUST00000002708 Tmem2Q5FWI3 1383 aa19.94■□□□□ 0.78
Shh-201ENSMUST00000002708 EvcP57680 1005 aa19.94■□□□□ 0.78
Shh-201ENSMUST00000002708 Nfat5Q9WV30 1534 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Eif4a1P60843 406 aaKnown RBP19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Nkx2-3P97334 362 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 CoilQ5SU73 570 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Gm45015A0A140LII9 184 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Gm18336A0A140LIU8 765 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Mcmdc2E9Q956 681 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Fkbp4P30416 458 aa19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Nol11Q8BJW5 723 aaKnown RBP19.93■□□□□ 0.78
Shh-201ENSMUST00000002708 Irf5P56477 497 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 VgfQ0VGU4 617 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Jakmip1Q8BVL9 626 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Rcan3Q9JKK0 239 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Robo1O89026 1612 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Exoc6bA6H5Z3 810 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Naa30Q8CES0 364 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Tns3Q5SSZ5 1440 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Lmtk3Q5XJV6 1424 aa19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Nup153E9Q3G8 1462 aaKnown RBP19.92■□□□□ 0.78
Shh-201ENSMUST00000002708 Tpx2A2APB8 745 aaKnown RBP19.91■□□□□ 0.78
Retrieved 100 of 22,080 RNA–protein pairs in 18.2 ms