Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 HOXB1-202ENST00000577092 1414 ntBASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PCDHGA1Q9Y5H4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AL162377.1-201ENST00000618844 1793 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 SDHAP1-207ENST00000440850 2000 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AC005332.3-201ENST00000589904 676 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 Z69720.1-201ENST00000601483 472 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 AL353801.3-201ENST00000609898 542 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 IGHV3-41-201ENST00000613121 348 ntBASIC18.02■□□□□ 0.48
PCDHGA1Q9Y5H4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 AL109659.2-201ENST00000606809 1674 ntBASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 AL391422.3-201ENST00000603791 2761 ntBASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.02■□□□□ 0.47
PCDHGA1Q9Y5H4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 AL512408.1-201ENST00000569378 2000 ntBASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 AP003733.1-201ENST00000491725 852 ntBASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 AL390719.2-201ENST00000606993 987 ntBASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 AC010240.3-201ENST00000607688 395 ntBASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA1Q9Y5H4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 LINC01521-201ENST00000504184 1943 ntBASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 AP000593.1-201ENST00000393668 712 ntBASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 KRT18P23-201ENST00000435622 1283 ntBASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms