Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC35.66■■■■□ 3.3
SHROOM4Q9ULL8 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 TSPY22P-201ENST00000427496 604 ntBASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 SEC1P-202ENST00000473944 940 ntBASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 LINC01711-201ENST00000598340 967 ntBASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
SHROOM4Q9ULL8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 AL590627.1-203ENST00000421194 1026 ntBASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 AP000867.3-201ENST00000524675 377 ntBASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 REXO1L6P-202ENST00000619970 1078 ntBASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC35.64■■■■□ 3.3
SHROOM4Q9ULL8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC35.63■■■■□ 3.3
SHROOM4Q9ULL8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 MIR1233-2-201ENST00000408138 82 ntBASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 MIR1233-1-201ENST00000408722 82 ntBASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 TP73-AS1-207ENST00000624167 988 ntBASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 IL9RP2-201ENST00000423948 1312 ntBASIC35.63■■■■□ 3.29
SHROOM4Q9ULL8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 AL136038.4-201ENST00000603606 1261 ntBASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC35.62■■■■□ 3.29
SHROOM4Q9ULL8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
SHROOM4Q9ULL8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 AC104819.1-201ENST00000504587 486 ntBASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 AC079776.4-201ENST00000511039 504 ntBASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 KRT18P58-201ENST00000527480 1120 ntBASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC35.6■■■■□ 3.29
SHROOM4Q9ULL8 BID-204ENST00000399767 2129 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC35.59■■■■□ 3.29
SHROOM4Q9ULL8 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
SHROOM4Q9ULL8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC35.58■■■■□ 3.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms