Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.4■□□□□ 0.22
COL12A1Q99715 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.4■□□□□ 0.22
COL12A1Q99715 AC124864.1-201ENST00000623408 392 ntBASIC16.4■□□□□ 0.22
COL12A1Q99715 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.4■□□□□ 0.22
COL12A1Q99715 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL12A1Q99715 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
COL12A1Q99715 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.4■□□□□ 0.22
COL12A1Q99715 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.4■□□□□ 0.22
COL12A1Q99715 AC007274.1-201ENST00000439805 662 ntBASIC16.4■□□□□ 0.22
COL12A1Q99715 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.4■□□□□ 0.22
COL12A1Q99715 AP001269.4-201ENST00000609611 512 ntBASIC16.4■□□□□ 0.22
COL12A1Q99715 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL12A1Q99715 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL12A1Q99715 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.4■□□□□ 0.22
COL12A1Q99715 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.4■□□□□ 0.22
COL12A1Q99715 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL12A1Q99715 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL12A1Q99715 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.39■□□□□ 0.22
COL12A1Q99715 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL12A1Q99715 AC002347.1-201ENST00000569543 541 ntBASIC16.39■□□□□ 0.22
COL12A1Q99715 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.39■□□□□ 0.22
COL12A1Q99715 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.39■□□□□ 0.22
COL12A1Q99715 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL12A1Q99715 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.39■□□□□ 0.21
COL12A1Q99715 BCRP1-201ENST00000444246 691 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 VENTXP7-201ENST00000475503 772 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 MIR5100-201ENST00000579544 119 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 AC005336.2-201ENST00000593183 939 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.39■□□□□ 0.21
COL12A1Q99715 MTDHP5-201ENST00000598980 586 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.39■□□□□ 0.21
COL12A1Q99715 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL12A1Q99715 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL12A1Q99715 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL12A1Q99715 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL12A1Q99715 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL12A1Q99715 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.39■□□□□ 0.21
COL12A1Q99715 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.39■□□□□ 0.21
COL12A1Q99715 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL12A1Q99715 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.39■□□□□ 0.21
COL12A1Q99715 AC040169.1-201ENST00000565382 521 ntBASIC16.39■□□□□ 0.21
COL12A1Q99715 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL12A1Q99715 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
COL12A1Q99715 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.38■□□□□ 0.21
COL12A1Q99715 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
COL12A1Q99715 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.38■□□□□ 0.21
COL12A1Q99715 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL12A1Q99715 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.38■□□□□ 0.21
COL12A1Q99715 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.38■□□□□ 0.21
COL12A1Q99715 YBX1P5-201ENST00000509441 847 ntBASIC16.38■□□□□ 0.21
COL12A1Q99715 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.38■□□□□ 0.21
COL12A1Q99715 AL591684.3-201ENST00000605187 298 ntBASIC16.38■□□□□ 0.21
COL12A1Q99715 AL035252.4-201ENST00000624174 288 ntBASIC16.38■□□□□ 0.21
COL12A1Q99715 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.38■□□□□ 0.21
COL12A1Q99715 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL12A1Q99715 AC104417.2-201ENST00000562989 1793 ntBASIC16.38■□□□□ 0.21
COL12A1Q99715 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.37■□□□□ 0.21
COL12A1Q99715 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.37■□□□□ 0.21
COL12A1Q99715 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.37■□□□□ 0.21
COL12A1Q99715 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.37■□□□□ 0.21
COL12A1Q99715 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
COL12A1Q99715 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.37■□□□□ 0.21
COL12A1Q99715 AC023274.1-201ENST00000418278 595 ntBASIC16.37■□□□□ 0.21
COL12A1Q99715 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.37■□□□□ 0.21
COL12A1Q99715 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.37■□□□□ 0.21
COL12A1Q99715 AL355877.3-201ENST00000622820 899 ntBASIC16.37■□□□□ 0.21
COL12A1Q99715 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
COL12A1Q99715 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms