Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 RCC2P3-201ENST00000418112 1537 ntBASIC18.64■□□□□ 0.57
VPS35Q96QK1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS35Q96QK1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS35Q96QK1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS35Q96QK1 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS35Q96QK1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TERF1P1-201ENST00000311003 1181 ntBASIC18.62■□□□□ 0.57
VPS35Q96QK1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 WWOX-216ENST00000569818 525 ntBASIC18.62■□□□□ 0.57
VPS35Q96QK1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 HEIH-201ENST00000623091 1652 ntBASIC18.62■□□□□ 0.57
VPS35Q96QK1 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS35Q96QK1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS35Q96QK1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 AC073508.3-201ENST00000619697 1419 ntBASIC18.61■□□□□ 0.57
VPS35Q96QK1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 MIR3180-5-201ENST00000583743 153 ntBASIC18.61■□□□□ 0.57
VPS35Q96QK1 CR769767.2-201ENST00000622735 460 ntBASIC18.61■□□□□ 0.57
VPS35Q96QK1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms