Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 KRT18P38-201ENST00000449496 1282 ntBASIC21.78■■□□□ 1.08
TRERF1Q96PN7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 CR769767.2-201ENST00000622735 460 ntBASIC21.78■■□□□ 1.08
TRERF1Q96PN7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRERF1Q96PN7 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRERF1Q96PN7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.77■■□□□ 1.07
TRERF1Q96PN7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.77■■□□□ 1.07
TRERF1Q96PN7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AL671277.2-201ENST00000458060 996 ntBASIC21.76■■□□□ 1.07
TRERF1Q96PN7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 GCSHP2-201ENST00000560971 527 ntBASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 AC125437.2-201ENST00000625180 2167 ntBASIC21.76■■□□□ 1.07
TRERF1Q96PN7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.76■■□□□ 1.07
TRERF1Q96PN7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AC098818.2-201ENST00000564925 2320 ntBASIC21.75■■□□□ 1.07
TRERF1Q96PN7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 UPK3BP1-201ENST00000428678 509 ntBASIC21.75■■□□□ 1.07
TRERF1Q96PN7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 FAM86EP-206ENST00000510506 987 ntBASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AL121956.5-201ENST00000625261 221 ntBASIC21.75■■□□□ 1.07
TRERF1Q96PN7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.75■■□□□ 1.07
TRERF1Q96PN7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.74■■□□□ 1.07
TRERF1Q96PN7 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 GPAT2P1-201ENST00000444924 1672 ntBASIC21.74■■□□□ 1.07
TRERF1Q96PN7 Z82202.1-201ENST00000623446 1880 ntBASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TRERF1Q96PN7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms