Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 DCAF7-202ENST00000431926 1354 ntTSL 1 (best)17.98■□□□□ 0.473e-14■□□□□ 11.3
DDX55Q8NHQ9 DCAF7-203ENST00000580091 325 ntTSL 312.58□□□□□ -0.43e-14■□□□□ 11.3
DDX55Q8NHQ9 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.533e-14■□□□□ 11.3
DDX55Q8NHQ9 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.912e-13■□□□□ 11.3
DDX55Q8NHQ9 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.32□□□□□ -1.562e-13■□□□□ 11.3
DDX55Q8NHQ9 DPP7-205ENST00000472306 919 ntTSL 528.11■■■□□ 2.091e-11■□□□□ 11.3
DDX55Q8NHQ9 DBI-210ENST00000542275 757 ntTSL 5 BASIC26.09■■□□□ 1.779e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-205ENST00000460901 774 ntTSL 1 (best)20.79■□□□□ 0.929e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.69■□□□□ 0.99e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.71■□□□□ 0.759e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.41■□□□□ 0.79e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.499e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-202ENST00000355857 637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.089e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-209ENST00000535757 740 ntTSL 1 (best) BASIC14.03□□□□□ -0.169e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-204ENST00000409094 576 ntTSL 1 (best) BASIC13.88□□□□□ -0.199e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-206ENST00000475783 842 ntTSL 1 (best)13.54□□□□□ -0.249e-14■□□□□ 11.3
DDX55Q8NHQ9 DBI-208ENST00000535617 654 ntTSL 1 (best) BASIC12.23□□□□□ -0.459e-14■□□□□ 11.3
DDX55Q8NHQ9 STUB1-211ENST00000569248 1853 ntTSL 532.53■■■□□ 2.88e-8■□□□□ 11.3
DDX55Q8NHQ9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.678e-8■□□□□ 11.3
DDX55Q8NHQ9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.73■■■□□ 2.518e-8■□□□□ 11.3
DDX55Q8NHQ9 STUB1-203ENST00000564316 729 ntTSL 316.5■□□□□ 0.238e-8■□□□□ 11.3
DDX55Q8NHQ9 STUB1-206ENST00000565813 337 ntTSL 314.72□□□□□ -0.058e-8■□□□□ 11.3
DDX55Q8NHQ9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.07□□□□□ -1.768e-20■□□□□ 11.3
DDX55Q8NHQ9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.76□□□□□ -1.818e-20■□□□□ 11.3
DDX55Q8NHQ9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.432e-10■□□□□ 11.3
DDX55Q8NHQ9 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.342e-10■□□□□ 11.3
DDX55Q8NHQ9 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.162e-10■□□□□ 11.3
DDX55Q8NHQ9 ATP6V0B-206ENST00000472277 536 ntTSL 322.93■■□□□ 1.267e-17■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-207ENST00000405478 799 ntTSL 533.1■■■□□ 2.894e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.26■■■□□ 2.754e-6■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.887e-12■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.52■■□□□ 1.847e-12■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-217ENST00000475818 1271 ntTSL 325.91■■□□□ 1.744e-6■□□□□ 11.3
DDX55Q8NHQ9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC25.2■■□□□ 1.624e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC24.34■■□□□ 1.494e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC24.08■■□□□ 1.454e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-216ENST00000458642 574 ntTSL 523.35■■□□□ 1.334e-6■□□□□ 11.3
DDX55Q8NHQ9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.23■■□□□ 1.314e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.21■■□□□ 1.314e-6■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-203ENST00000507479 649 ntTSL 422.57■■□□□ 1.24e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC22.55■■□□□ 1.24e-6■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-204ENST00000507753 605 ntTSL 322.38■■□□□ 1.174e-6■□□□□ 11.3
DDX55Q8NHQ9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.75■■□□□ 1.072e-11■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.064e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.014e-6■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-207ENST00000538523 931 ntTSL 221.28■■□□□ 18e-16■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.83■□□□□ 0.934e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.94e-6■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.48■□□□□ 0.878e-16■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.844e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.784e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.744e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-218ENST00000636639 2125 ntTSL 1 (best)19.57■□□□□ 0.724e-6■□□□□ 11.3
DDX55Q8NHQ9 KLC4-212ENST00000470728 872 ntTSL 519.2■□□□□ 0.664e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.664e-6■□□□□ 11.3
DDX55Q8NHQ9 HDAC11-210ENST00000425430 1021 ntTSL 219.09■□□□□ 0.654e-6■□□□□ 11.3
DDX55Q8NHQ9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.612e-8■□□□□ 11.3
DDX55Q8NHQ9 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.84■□□□□ 0.614e-6■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-208ENST00000538662 1186 ntTSL 218.49■□□□□ 0.558e-16■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.534e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.524e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.514e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-216ENST00000636574 2027 ntTSL 518.22■□□□□ 0.514e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.54e-6■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-209ENST00000538929 630 ntTSL 418.13■□□□□ 0.498e-16■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-219ENST00000636787 2012 ntTSL 517.73■□□□□ 0.434e-6■□□□□ 11.3
DDX55Q8NHQ9 KLC4-211ENST00000469987 765 ntTSL 517.6■□□□□ 0.414e-6■□□□□ 11.3
DDX55Q8NHQ9 GRB7-213ENST00000584819 1146 ntTSL 217.59■□□□□ 0.412e-11■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.44e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-209ENST00000635774 1995 ntTSL 517.42■□□□□ 0.384e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.384e-6■□□□□ 11.3
DDX55Q8NHQ9 PKP4-205ENST00000426248 4134 ntTSL 1 (best)17.12■□□□□ 0.334e-6■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.07■□□□□ 0.328e-16■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.99■□□□□ 0.317e-12■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-208ENST00000635734 1851 ntTSL 516.7■□□□□ 0.264e-6■□□□□ 11.3
DDX55Q8NHQ9 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.234e-6■□□□□ 11.3
DDX55Q8NHQ9 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.162e-11■□□□□ 11.3
DDX55Q8NHQ9 NDUFS7-204ENST00000436115 2879 ntTSL 515.57■□□□□ 0.088e-16■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-207ENST00000455712 823 ntTSL 315.56■□□□□ 0.087e-12■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-202ENST00000423649 1093 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.034e-6■□□□□ 11.3
DDX55Q8NHQ9 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.094e-6■□□□□ 11.3
DDX55Q8NHQ9 TCTN3-204ENST00000430368 1778 ntTSL 2 BASIC14.47□□□□□ -0.094e-6■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-205ENST00000443489 807 ntTSL 2 BASIC14.24□□□□□ -0.137e-12■□□□□ 11.3
DDX55Q8NHQ9 IVNS1ABP-204ENST00000459929 3657 ntTSL 514.01□□□□□ -0.172e-8■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-211ENST00000488213 1035 ntTSL 213.43□□□□□ -0.267e-12■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-202ENST00000429568 878 ntTSL 2 BASIC13.38□□□□□ -0.277e-12■□□□□ 11.3
DDX55Q8NHQ9 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.374e-6■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-212ENST00000489043 433 ntTSL 212.69□□□□□ -0.387e-12■□□□□ 11.3
DDX55Q8NHQ9 TCTN3-201ENST00000265993 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.574e-6■□□□□ 11.3
DDX55Q8NHQ9 GRB7-207ENST00000473071 467 ntTSL 211.39□□□□□ -0.592e-11■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-206ENST00000452961 791 ntTSL 2 BASIC11.31□□□□□ -0.67e-12■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-204ENST00000447485 1254 ntTSL 5 BASIC10.72□□□□□ -0.694e-6■□□□□ 11.3
DDX55Q8NHQ9 TCTN3-207ENST00000614499 2739 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.764e-6■□□□□ 11.3
DDX55Q8NHQ9 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.774e-6■□□□□ 11.3
DDX55Q8NHQ9 TCTN3-203ENST00000371217 2514 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.784e-6■□□□□ 11.3
DDX55Q8NHQ9 POLR2H-213ENST00000490958 434 ntTSL 29.62□□□□□ -0.874e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-231ENST00000637955 1084 ntTSL 59.11□□□□□ -0.954e-6■□□□□ 11.3
DDX55Q8NHQ9 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC8.79□□□□□ -11e-14■□□□□ 11.3
DDX55Q8NHQ9 ANKRD37-206ENST00000511393 1444 ntTSL 28.39□□□□□ -1.074e-6■□□□□ 11.3
DDX55Q8NHQ9 ATP6AP2-210ENST00000635829 2479 ntTSL 58.31□□□□□ -1.084e-6■□□□□ 11.3
Retrieved 100 of 15,504 protein–RNA pairs in 215.5 ms