Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.96■□□□□ 0.95
USP38Q8NB14 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.96■□□□□ 0.95
USP38Q8NB14 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.96■□□□□ 0.95
USP38Q8NB14 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.96■□□□□ 0.95
USP38Q8NB14 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 AL023973.1-201ENST00000624619 620 ntBASIC20.96■□□□□ 0.95
USP38Q8NB14 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP38Q8NB14 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP38Q8NB14 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP38Q8NB14 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.96■□□□□ 0.95
USP38Q8NB14 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.95
USP38Q8NB14 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP38Q8NB14 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 AC004870.1-201ENST00000315132 882 ntBASIC20.95■□□□□ 0.94
USP38Q8NB14 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 UNC93B7-201ENST00000509439 705 ntBASIC20.95■□□□□ 0.94
USP38Q8NB14 AL136038.3-201ENST00000561909 1096 ntBASIC20.95■□□□□ 0.94
USP38Q8NB14 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.95■□□□□ 0.94
USP38Q8NB14 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
USP38Q8NB14 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.95■□□□□ 0.94
USP38Q8NB14 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.95■□□□□ 0.94
USP38Q8NB14 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.95■□□□□ 0.94
USP38Q8NB14 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP38Q8NB14 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP38Q8NB14 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP38Q8NB14 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 Z82202.1-201ENST00000623446 1880 ntBASIC20.94■□□□□ 0.94
USP38Q8NB14 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.94■□□□□ 0.94
USP38Q8NB14 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
USP38Q8NB14 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
USP38Q8NB14 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.94■□□□□ 0.94
USP38Q8NB14 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
USP38Q8NB14 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.94■□□□□ 0.94
USP38Q8NB14 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
USP38Q8NB14 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.94■□□□□ 0.94
USP38Q8NB14 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.94■□□□□ 0.94
USP38Q8NB14 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP38Q8NB14 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USP38Q8NB14 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP38Q8NB14 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.93■□□□□ 0.94
USP38Q8NB14 AC009078.2-202ENST00000463353 338 ntBASIC20.93■□□□□ 0.94
USP38Q8NB14 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.93■□□□□ 0.94
USP38Q8NB14 AC092119.3-201ENST00000612618 583 ntBASIC20.93■□□□□ 0.94
USP38Q8NB14 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP38Q8NB14 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
USP38Q8NB14 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.93■□□□□ 0.94
USP38Q8NB14 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
USP38Q8NB14 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP38Q8NB14 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP38Q8NB14 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP38Q8NB14 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.92■□□□□ 0.94
USP38Q8NB14 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP38Q8NB14 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP38Q8NB14 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP38Q8NB14 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP38Q8NB14 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.92■□□□□ 0.94
USP38Q8NB14 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.92■□□□□ 0.94
USP38Q8NB14 PRELID1P1-202ENST00000567272 903 ntBASIC20.92■□□□□ 0.94
USP38Q8NB14 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.92■□□□□ 0.94
USP38Q8NB14 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.92■□□□□ 0.94
USP38Q8NB14 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.92■□□□□ 0.94
USP38Q8NB14 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms