Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 KRT8P10-201ENST00000450021 1447 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 KRT8P7-201ENST00000533003 1432 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 HOXB1-202ENST00000577092 1414 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 LINC00265-3P-201ENST00000447588 903 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 AC104390.1-201ENST00000555663 520 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 AL732292.2-201ENST00000609649 430 ntBASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.43■□□□□ 0.7
NPAS3Q8IXF0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 TSPY19P-201ENST00000418461 509 ntBASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 TSPY18P-201ENST00000441642 509 ntBASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 AP000867.3-201ENST00000524675 377 ntBASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPAS3Q8IXF0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 Z83836.1-201ENST00000624605 1642 ntBASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPAS3Q8IXF0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms