Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 KRT18P23-201ENST00000435622 1283 ntBASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 TERC-201ENST00000602385 541 ntBASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 AL592071.1-201ENST00000611956 408 ntBASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC88AQ3V6T2 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.97■■□□□ 1.27
CCDC88AQ3V6T2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 GAD2-202ENST00000376248 680 ntTSL 5 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 AC018712.1-201ENST00000455767 687 ntBASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.96■■□□□ 1.27
CCDC88AQ3V6T2 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
CCDC88AQ3V6T2 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.27
CCDC88AQ3V6T2 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TEX21P-204ENST00000641479 1693 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 KRT18P67-201ENST00000432816 1264 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 FAM197Y8-203ENST00000450145 560 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 AC145285.3-201ENST00000564603 959 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 AC008608.2-201ENST00000606089 416 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TREX1-205ENST00000625293 1783 ntBASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC88AQ3V6T2 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AL031284.1-201ENST00000419297 478 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 PGAM5P1-201ENST00000518923 814 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AP005901.3-202ENST00000581653 237 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 LINC01711-201ENST00000598340 967 ntBASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
CCDC88AQ3V6T2 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms