Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.56■□□□□ 0.56
LIMK1P53667 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.55■□□□□ 0.56
LIMK1P53667 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LIMK1P53667 MIR662-201ENST00000384847 95 ntBASIC18.55■□□□□ 0.56
LIMK1P53667 KRT16P4-201ENST00000453883 522 ntBASIC18.55■□□□□ 0.56
LIMK1P53667 TOB2P1-201ENST00000469761 992 ntBASIC18.55■□□□□ 0.56
LIMK1P53667 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.55■□□□□ 0.56
LIMK1P53667 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIMK1P53667 AL353801.3-201ENST00000609898 542 ntBASIC18.55■□□□□ 0.56
LIMK1P53667 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.55■□□□□ 0.56
LIMK1P53667 AF228730.7-201ENST00000641842 219 ntBASIC18.55■□□□□ 0.56
LIMK1P53667 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LIMK1P53667 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIMK1P53667 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMK1P53667 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMK1P53667 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
LIMK1P53667 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMK1P53667 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.54■□□□□ 0.56
LIMK1P53667 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.54■□□□□ 0.56
LIMK1P53667 MIR1233-2-201ENST00000408138 82 ntBASIC18.54■□□□□ 0.56
LIMK1P53667 MIR1233-1-201ENST00000408722 82 ntBASIC18.54■□□□□ 0.56
LIMK1P53667 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.54■□□□□ 0.56
LIMK1P53667 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.54■□□□□ 0.56
LIMK1P53667 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LIMK1P53667 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 LINC01465-201ENST00000408887 1940 ntBASIC18.54■□□□□ 0.56
LIMK1P53667 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LIMK1P53667 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMK1P53667 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMK1P53667 AC116562.4-201ENST00000641316 2276 ntBASIC18.53■□□□□ 0.56
LIMK1P53667 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LIMK1P53667 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.53■□□□□ 0.56
LIMK1P53667 TSPY12P-201ENST00000421279 868 ntBASIC18.53■□□□□ 0.56
LIMK1P53667 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMK1P53667 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.53■□□□□ 0.56
LIMK1P53667 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMK1P53667 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMK1P53667 AC104819.1-201ENST00000504587 486 ntBASIC18.53■□□□□ 0.56
LIMK1P53667 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMK1P53667 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.53■□□□□ 0.56
LIMK1P53667 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIMK1P53667 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.53■□□□□ 0.56
LIMK1P53667 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LIMK1P53667 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.52■□□□□ 0.56
LIMK1P53667 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.52■□□□□ 0.56
LIMK1P53667 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.52■□□□□ 0.56
LIMK1P53667 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LIMK1P53667 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.52■□□□□ 0.56
LIMK1P53667 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.52■□□□□ 0.56
LIMK1P53667 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMK1P53667 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms