Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.65■□□□□ 0.9
CLCN3P51790 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CLCN3P51790 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.65■□□□□ 0.9
CLCN3P51790 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.65■□□□□ 0.9
CLCN3P51790 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
CLCN3P51790 AC093458.2-201ENST00000623150 629 ntBASIC20.65■□□□□ 0.9
CLCN3P51790 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.65■□□□□ 0.9
CLCN3P51790 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCN3P51790 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLCN3P51790 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLCN3P51790 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLCN3P51790 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.64■□□□□ 0.9
CLCN3P51790 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.64■□□□□ 0.89
CLCN3P51790 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 AL049812.1-201ENST00000432563 2267 ntBASIC20.64■□□□□ 0.89
CLCN3P51790 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 MIR564-202ENST00000385049 94 ntBASIC20.64■□□□□ 0.89
CLCN3P51790 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.64■□□□□ 0.89
CLCN3P51790 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.64■□□□□ 0.89
CLCN3P51790 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.64■□□□□ 0.89
CLCN3P51790 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.64■□□□□ 0.89
CLCN3P51790 AC079602.3-201ENST00000623931 403 ntBASIC20.64■□□□□ 0.89
CLCN3P51790 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.64■□□□□ 0.89
CLCN3P51790 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.64■□□□□ 0.89
CLCN3P51790 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
CLCN3P51790 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.64■□□□□ 0.89
CLCN3P51790 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
CLCN3P51790 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCN3P51790 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.63■□□□□ 0.89
CLCN3P51790 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CLCN3P51790 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.63■□□□□ 0.89
CLCN3P51790 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CLCN3P51790 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.63■□□□□ 0.89
CLCN3P51790 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CLCN3P51790 AC068587.9-201ENST00000641814 219 ntBASIC20.63■□□□□ 0.89
CLCN3P51790 AL161938.1-201ENST00000569833 2180 ntBASIC20.63■□□□□ 0.89
CLCN3P51790 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CLCN3P51790 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.63■□□□□ 0.89
CLCN3P51790 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCN3P51790 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.63■□□□□ 0.89
CLCN3P51790 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.63■□□□□ 0.89
CLCN3P51790 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.62■□□□□ 0.89
CLCN3P51790 MIR3917-201ENST00000580971 93 ntBASIC20.62■□□□□ 0.89
CLCN3P51790 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.62■□□□□ 0.89
CLCN3P51790 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.62■□□□□ 0.89
CLCN3P51790 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.62■□□□□ 0.89
CLCN3P51790 AC116562.4-201ENST00000641316 2276 ntBASIC20.62■□□□□ 0.89
CLCN3P51790 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLCN3P51790 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CLCN3P51790 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.61■□□□□ 0.89
CLCN3P51790 AC005332.7-201ENST00000614046 2005 ntBASIC20.61■□□□□ 0.89
CLCN3P51790 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
CLCN3P51790 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CLCN3P51790 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.61■□□□□ 0.89
CLCN3P51790 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLCN3P51790 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms