Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
SOX3P41225 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX3P41225 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX3P41225 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX3P41225 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.67■□□□□ 0.42
SOX3P41225 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX3P41225 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX3P41225 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX3P41225 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX3P41225 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SOX3P41225 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.66■□□□□ 0.42
SOX3P41225 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX3P41225 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX3P41225 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
SOX3P41225 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SOX3P41225 CROCCP3-202ENST00000420820 1947 ntBASIC17.66■□□□□ 0.42
SOX3P41225 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX3P41225 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX3P41225 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX3P41225 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX3P41225 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
SOX3P41225 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.65■□□□□ 0.42
SOX3P41225 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.65■□□□□ 0.42
SOX3P41225 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SOX3P41225 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SOX3P41225 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.65■□□□□ 0.42
SOX3P41225 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX3P41225 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SOX3P41225 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
SOX3P41225 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SOX3P41225 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SOX3P41225 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX3P41225 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX3P41225 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.64■□□□□ 0.41
SOX3P41225 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.64■□□□□ 0.41
SOX3P41225 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.64■□□□□ 0.41
SOX3P41225 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.64■□□□□ 0.41
SOX3P41225 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX3P41225 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms