Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH3P22223 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH3P22223 TMPOP1-202ENST00000424642 1267 ntBASIC18.38■□□□□ 0.53
CDH3P22223 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 ATP5G1P1-201ENST00000448724 379 ntBASIC18.38■□□□□ 0.53
CDH3P22223 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.38■□□□□ 0.53
CDH3P22223 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH3P22223 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH3P22223 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH3P22223 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CDH3P22223 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 INGX-201ENST00000359239 846 ntBASIC18.37■□□□□ 0.53
CDH3P22223 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 TSPY21P-201ENST00000433481 731 ntBASIC18.37■□□□□ 0.53
CDH3P22223 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
CDH3P22223 RN7SL850P-201ENST00000579959 291 ntBASIC18.37■□□□□ 0.53
CDH3P22223 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH3P22223 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.37■□□□□ 0.53
CDH3P22223 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH3P22223 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH3P22223 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH3P22223 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CDH3P22223 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDH3P22223 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 TERF1P1-201ENST00000311003 1181 ntBASIC18.36■□□□□ 0.53
CDH3P22223 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.36■□□□□ 0.53
CDH3P22223 KRT18P57-201ENST00000443599 1254 ntBASIC18.36■□□□□ 0.53
CDH3P22223 TSPY17P-201ENST00000450329 467 ntBASIC18.36■□□□□ 0.53
CDH3P22223 CA15P1-201ENST00000481698 905 ntBASIC18.36■□□□□ 0.53
CDH3P22223 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH3P22223 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH3P22223 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 AC092865.7-201ENST00000641832 219 ntBASIC18.36■□□□□ 0.53
CDH3P22223 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH3P22223 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CDH3P22223 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH3P22223 Z82202.1-201ENST00000623446 1880 ntBASIC18.35■□□□□ 0.53
CDH3P22223 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CDH3P22223 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CDH3P22223 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH3P22223 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms