Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
VCANP13611 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VCANP13611 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.42■□□□□ 0.7
VCANP13611 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.42■□□□□ 0.7
VCANP13611 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.42■□□□□ 0.7
VCANP13611 MINOS1P3-201ENST00000457048 203 ntBASIC19.42■□□□□ 0.7
VCANP13611 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.42■□□□□ 0.7
VCANP13611 AC005225.4-201ENST00000557330 545 ntBASIC19.42■□□□□ 0.7
VCANP13611 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCANP13611 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VCANP13611 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.41■□□□□ 0.7
VCANP13611 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VCANP13611 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 HLA-J-201ENST00000462773 1622 ntBASIC19.41■□□□□ 0.7
VCANP13611 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 LINC00565-201ENST00000562710 2331 ntBASIC19.41■□□□□ 0.7
VCANP13611 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VCANP13611 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VCANP13611 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.41■□□□□ 0.7
VCANP13611 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCANP13611 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 FGFR3P6-201ENST00000457012 610 ntBASIC19.41■□□□□ 0.7
VCANP13611 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.41■□□□□ 0.7
VCANP13611 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.41■□□□□ 0.7
VCANP13611 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.41■□□□□ 0.7
VCANP13611 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VCANP13611 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.4■□□□□ 0.7
VCANP13611 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.4■□□□□ 0.7
VCANP13611 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 SNHG9-202ENST00000564014 471 ntBASIC19.4■□□□□ 0.7
VCANP13611 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.4■□□□□ 0.7
VCANP13611 AC027612.4-201ENST00000605371 583 ntBASIC19.4■□□□□ 0.7
VCANP13611 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.4■□□□□ 0.7
VCANP13611 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.4■□□□□ 0.7
VCANP13611 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.4■□□□□ 0.7
VCANP13611 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 RPS2P1-201ENST00000434010 821 ntBASIC19.4■□□□□ 0.7
VCANP13611 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VCANP13611 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.4■□□□□ 0.7
VCANP13611 IGHV3-41-201ENST00000613121 348 ntBASIC19.4■□□□□ 0.7
VCANP13611 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCANP13611 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VCANP13611 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 AC092474.2-201ENST00000424288 719 ntBASIC19.39■□□□□ 0.69
VCANP13611 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.39■□□□□ 0.69
VCANP13611 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.39■□□□□ 0.69
VCANP13611 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.39■□□□□ 0.69
VCANP13611 AL591684.3-201ENST00000605187 298 ntBASIC19.39■□□□□ 0.69
VCANP13611 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.39■□□□□ 0.69
VCANP13611 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
VCANP13611 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 KRT18P23-201ENST00000435622 1283 ntBASIC19.39■□□□□ 0.69
VCANP13611 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
VCANP13611 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.39■□□□□ 0.69
VCANP13611 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.39■□□□□ 0.69
VCANP13611 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VCANP13611 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VCANP13611 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VCANP13611 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 AC026310.3-201ENST00000625186 2373 ntBASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms